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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   TDP1   tyrosyl-DNA phosphodiesterase-like protein 
 ath-r.7   TDP1   tyrosyl-DNA phosphodiesterase-like protein 
 ath-m.9   TDP1   tyrosyl-DNA phosphodiesterase-like protein 
 ath-e.2   TDP1   tyrosyl-DNA phosphodiesterase-like protein 
 ath-m.4.bio   TDP1   tyrosyl-DNA phosphodiesterase-like protein 
 ath-m.4.hor   TDP1   tyrosyl-DNA phosphodiesterase-like protein 
 ath-m.4.lig   TDP1   tyrosyl-DNA phosphodiesterase-like protein 
 ath-m.4.str   TDP1   tyrosyl-DNA phosphodiesterase-like protein 
 ath-m.4.tis   TDP1   tyrosyl-DNA phosphodiesterase-like protein 
 bra-r.6   103856120   tyrosyl-DNA phosphodiesterase 1 
 bna-r.1   106431855   tyrosyl-DNA phosphodiesterase 1 
 bna-r.1   106432741   tyrosyl-DNA phosphodiesterase 1-like 
 ghi-r.1   107924901   tyrosyl-DNA phosphodiesterase 1 
 ghi-r.1   107935343   tyrosyl-DNA phosphodiesterase 1 
 cit-r.1   102627995   tyrosyl-DNA phosphodiesterase 1 
 gma-u.5   100793746   tyrosyl-DNA phosphodiesterase 1 
 vvi-u.5   100247070   tyrosyl-DNA phosphodiesterase 1 
 ppo-u.5   7479095   tyrosyl-DNA phosphodiesterase 1 
 mtr-u.5   11437867   tyrosyl-DNA phosphodiesterase 1 
 sly-u.5   101257338   tyrosyl-DNA phosphodiesterase 1 
 sot-r.1   102604923   tyrosyl-DNA phosphodiesterase 1 
 nta-r.1   107791644   tyrosyl-DNA phosphodiesterase 1 
 nta-r.1   107813187   tyrosyl-DNA phosphodiesterase 1 
 osa-u.5   4343446   tyrosyl-DNA phosphodiesterase 1 
 zma-u.5   100383136   Tyrosyl-DNA phosphodiesterase 1 
 tae-r.2   123188400   tyrosyl-DNA phosphodiesterase 1 
 tae-r.2   123052521   tyrosyl-DNA phosphodiesterase 1 
 tae-r.2   123044642   tyrosyl-DNA phosphodiesterase 1 
 hvu-r.1   123425840   tyrosyl-DNA phosphodiesterase 1 
 sbi-r.1   8080148   tyrosyl-DNA phosphodiesterase 1 
 bdi-r.1   100840189   tyrosyl-DNA phosphodiesterase 1 
 cre-r.1   CHLRE_01g053200v5   uncharacterized protein 

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Top 50 coexpressed genes to TDP1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TDP1 (ath-u.5 coexpression data)

CoexMap"831369"


athTDP1 | Entrez gene ID : 831369      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03410 [list] [network] Base excision repair (50 genes)
GO BP
GO:0006281 [list] [network] DNA repair  (203 genes)  NAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO MF
GO:0017005 [list] [network] 3'-tyrosyl-DNA phosphodiesterase activity  (1 genes)  IDA  
Protein NP_197021.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 3,  chlo 2,  cysk_nucl 2  (predict for NP_197021.2)
Subcellular
localization
TargetP
chlo 5,  other 3  (predict for NP_197021.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
TDP1
ath-r.7
for
TDP1
ath-m.9
for
TDP1
ath-e.2
for
TDP1
ath-m.4.bio
for
TDP1
ath-m.4.hor
for
TDP1
ath-m.4.lig
for
TDP1
ath-m.4.str
for
TDP1
ath-m.4.tis
for
TDP1
bra-r.6
for
103856120
bna-r.1
for
106431855
bna-r.1
for
106432741
ghi-r.1
for
107924901
ghi-r.1
for
107935343
cit-r.1
for
102627995
gma-u.5
for
100793746
vvi-u.5
for
100247070
ppo-u.5
for
7479095
mtr-u.5
for
11437867
sly-u.5
for
101257338
sot-r.1
for
102604923
nta-r.1
for
107791644
nta-r.1
for
107813187
osa-u.5
for
4343446
zma-u.5
for
100383136
tae-r.2
for
123188400
tae-r.2
for
123052521
tae-r.2
for
123044642
hvu-r.1
for
123425840
sbi-r.1
for
8080148
bdi-r.1
for
100840189
cre-r.1
for
CHLRE_01g053200v5


Ortholog ID: 10300
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol TDP1 LOC103856120 LOC106431855 LOC106432741 LOC107924901 LOC107935343 LOC102627995 LOC100793746 LOC100247070 LOC7479095 LOC11437867 LOC101257338 LOC102604923 LOC107791644 LOC107813187 LOC4343446 LOC100383136 LOC123188400 LOC123052521 LOC123044642 LOC123425840 LOC8080148 LOC100840189 CHLRE_01g053200v5
Function* tyrosyl-DNA phosphodiesterase-like protein tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1-like tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 Tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 tyrosyl-DNA phosphodiesterase 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 5
bna03420 Nucleotide excision repair 4
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 9
bna03420 Nucleotide excision repair 7
bna04141 Protein processing in endoplasmic reticulum 3
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 3
gma00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03460 Fanconi anemia pathway 4
tae03410 Base excision repair 3
tae03020 RNA polymerase 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03430 Mismatch repair 5
tae03460 Fanconi anemia pathway 5
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 3
tae03430 Mismatch repair 2
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03410 Base excision repair 4
bdi03450 Non-homologous end-joining 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831369 103856120 106431855 106432741 107924901 107935343 102627995 100793746 100247070 7479095 11437867 101257338 102604923 107791644 107813187 4343446 100383136 123188400 123052521 123044642 123425840 8080148 100840189 5715790
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