ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT2G24530	transcriptional regulator of RNA polII, SAGA, subunit
ath-u.5	AT4G31440	transcriptional regulator of RNA polII, SAGA, subunit
gma-u.5	100803746	uncharacterized LOC100803746
gma-u.5	100811524	uncharacterized LOC100811524
vvi-u.5	100852560	uncharacterized LOC100852560
vvi-u.5	104880381	uncharacterized LOC104880381
ppo-u.5	7476672	uncharacterized LOC7476672
ppo-u.5	7461331	uncharacterized LOC7461331
ppo-u.5	7476802	uncharacterized LOC7476802
mtr-u.5	120579462	uncharacterized LOC120579462
mtr-u.5	11425686	uncharacterized LOC11425686
sly-u.5	101254809	uncharacterized LOC101254809
sly-u.5	101249541	uncharacterized LOC101249541
osa-u.5	4337266	uncharacterized LOC4337266
zma-u.5	103645818	uncharacterized LOC103645818
zma-u.5	100275576	uncharacterized LOC100275576

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(1371 genes)

IEA

GO CC

GO:0000124 [list] [network] SAGA complex

(54 genes)

IEA

GO MF

GO:0003713 [list] [network] transcription coactivator activity

(127 genes)

IEA

Protein

XP_013716797.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 3, cysk_nucl 3

(predict for XP_013716797.1)

Subcellular
localization
TargetP

other 9

(predict for XP_013716797.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT2G24530	ath-u.5 for AT4G31440	gma-u.5 for 100803746	gma-u.5 for 100811524	vvi-u.5 for 100852560	vvi-u.5 for 104880381	ppo-u.5 for 7476672	ppo-u.5 for 7461331	ppo-u.5 for 7476802	mtr-u.5 for 120579462	mtr-u.5 for 11425686	sly-u.5 for 101254809	sly-u.5 for 101249541	osa-u.5 for 4337266	zma-u.5 for 103645818	zma-u.5 for 100275576

Ortholog

Ortholog ID: 3201

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized BNAC03G67600D

uncharacterized LOC103851844

uncharacterized LOC103842250

transcriptional regulator of RNA polII, SAGA, subunit

uncharacterized LOC107958329

uncharacterized LOC107932990

uncharacterized LOC102628352

uncharacterized LOC107174604

uncharacterized LOC100811524

uncharacterized LOC100852560

uncharacterized LOC104880381

uncharacterized LOC18100755

uncharacterized LOC7476802

uncharacterized LOC120579462

uncharacterized LOC11425686

uncharacterized LOC101249541

uncharacterized LOC101254809

uncharacterized LOC102582380

uncharacterized LOC102594722

uncharacterized LOC107792395

uncharacterized LOC107809335

uncharacterized LOC4337266

uncharacterized LOC100275576

uncharacterized LOC103645818

uncharacterized LOC123054849

uncharacterized LOC123047017

uncharacterized LOC123428071

uncharacterized LOC8070257

uncharacterized LOC100844231

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	2
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	3
bra03250	Viral life cycle - HIV-1	3
bra03040	Spliceosome	2
bra03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00520	Amino sugar and nucleotide sugar metabolism	3
ath03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03083	Polycomb repressive complex	2
ghi00270	Cysteine and methionine metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	3
vvi03082	ATP-dependent chromatin remodeling	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	5
sot00195	Photosynthesis	3
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	2
nta03040	Spliceosome	2
nta00561	Glycerolipid metabolism	2
nta00564	Glycerophospholipid metabolism	2
nta04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

106390045

103851844

103842250

829271

816989

107958329

107932990

102628352

107174604

100811524

100852560

104880381

18100755

7476802

120579462

11425686

101249541

101254809

102582380

102594722

107792395

107809335

4337266

100275576

103645818

123054849

123047017

123428071

8070257

100844231

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT2G24530 (ath-u.5 coexpression data)

Top 50 enrichment test to AT2G24530 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	2	2	2	3	2	2	1	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT2G24530 (ath-u.5 coexpression data)

Top 50 enrichment test to AT2G24530 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**