ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106430812	nuclear transcription factor Y subunit C-1
bna-r.1	125610291	nuclear transcription factor Y subunit C-1-like
bna-r.1	125610289	nuclear transcription factor Y subunit C-1-like
bna-r.1	106348404	nuclear transcription factor Y subunit C-4
bra-r.6	103836365	nuclear transcription factor Y subunit C-9-like
bra-r.6	103843367	nuclear transcription factor Y subunit C-9
bra-r.6	103830155	nuclear transcription factor Y subunit C-2
ath-u.5	NF-YC1	nuclear factor Y, subunit C1
ath-u.5	NF-YC4	nuclear factor Y, subunit C4
ath-u.5	NF-YC9	nuclear factor Y, subunit C9
ghi-r.1	107920899	nuclear transcription factor Y subunit C-2
ghi-r.1	107916619	nuclear transcription factor Y subunit C-2
ghi-r.1	107887675	nuclear transcription factor Y subunit C-9
cit-r.1	102617055	nuclear transcription factor Y subunit C-1
cit-r.1	102609372	nuclear transcription factor Y subunit C-9
cit-r.1	102628121	nuclear transcription factor Y subunit C-2
gma-u.5	NF-YC07	nuclear factor Y transcription factor family protein
gma-u.5	NF-YC04	nuclear factor Y transcription factor family protein
gma-u.5	NF-YC13	nuclear factor Y transcription factor
vvi-u.5	100243367	nuclear transcription factor Y subunit C-2
vvi-u.5	100266507	nuclear transcription factor Y subunit C-3
vvi-u.5	100259532	nuclear transcription factor Y subunit C-1
ppo-u.5	7473301	nuclear transcription factor Y subunit C-3
ppo-u.5	7454724	nuclear transcription factor Y subunit C-1
ppo-u.5	7492093	nuclear transcription factor Y subunit C-2
mtr-u.5	120578221	nuclear transcription factor Y subunit C-2
mtr-u.5	11410747	nuclear transcription factor Y subunit C-3
mtr-u.5	11429705	nuclear transcription factor Y subunit C-1
sly-u.5	101247122	nuclear transcription factor Y subunit C-1
sly-u.5	CIP2a	CONSTANS interacting protein 2a
sly-u.5	CIP2b	CONSTANS interacting protein 2b
sot-r.1	102577612	uncharacterized LOC102577612
sot-r.1	102587685	nuclear transcription factor Y subunit C-9-like
sot-r.1	102597101	nuclear transcription factor Y subunit C-1-like
nta-r.1	107828294	nuclear transcription factor Y subunit C-1-like
nta-r.1	107765408	nuclear transcription factor Y subunit C-1
nta-r.1	107797519	nuclear transcription factor Y subunit C-1
osa-u.5	4347391	nuclear transcription factor Y subunit C-6-like
osa-u.5	4328444	nuclear transcription factor Y subunit C-4-like
osa-u.5	4341785	nuclear transcription factor Y subunit C-4-like
zma-u.5	100283252	nuclear transcription factor Y subunit C-2
zma-u.5	100277570	Nuclear transcription factor Y subunit C-9
zma-u.5	100273685	nuclear transcription factor Y subunit C-2
tae-r.2	123162727	nuclear transcription factor Y subunit C-4
tae-r.2	123121862	nuclear transcription factor Y subunit C-6
tae-r.2	123112331	nuclear transcription factor Y subunit C-6
hvu-r.1	123408918	nuclear transcription factor Y subunit C-6-like
hvu-r.1	123449145	nuclear transcription factor Y subunit C-2-like
sbi-r.1	8071112	nuclear transcription factor Y subunit C-4
sbi-r.1	8055845	nuclear transcription factor Y subunit C-6
sbi-r.1	8067022	nuclear transcription factor Y subunit C-6
bdi-r.1	100832359	nuclear transcription factor Y subunit C-6
bdi-r.1	100836803	nuclear transcription factor Y subunit C-2
bdi-r.1	100838294	nuclear transcription factor Y subunit C-4
cre-r.1	CHLRE_12g556400v5	uncharacterized protein

Top 50 coexpressed genes to 106430812 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106430812 (bna-r.1 coexpression data)

CoexMap"106430812"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(5322 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(9971 genes)

IEA

GO MF

GO:0001228 [list] [network] DNA-binding transcription activator activity, RNA polymerase II-specific	(54 genes)	IEA
GO:0046982 [list] [network] protein heterodimerization activity	(268 genes)	IEA
GO:0003677 [list] [network] DNA binding	(6522 genes)	IEA

Protein

XP_013727066.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 3, chlo 2, mito 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1

(predict for XP_013727066.2)

Subcellular
localization
TargetP

other 5

(predict for XP_013727066.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106430812	bna-r.1 for 125610291	bna-r.1 for 125610289	bna-r.1 for 106348404	bra-r.6 for 103836365	bra-r.6 for 103843367	bra-r.6 for 103830155	ath-u.5 for NF-YC1	ath-u.5 for NF-YC4	ath-u.5 for NF-YC9	ghi-r.1 for 107920899	ghi-r.1 for 107916619	ghi-r.1 for 107887675	cit-r.1 for 102617055	cit-r.1 for 102609372	cit-r.1 for 102628121	gma-u.5 for NF-YC07	gma-u.5 for NF-YC04	gma-u.5 for NF-YC13	vvi-u.5 for 100243367	vvi-u.5 for 100266507	vvi-u.5 for 100259532	ppo-u.5 for 7473301	ppo-u.5 for 7454724	ppo-u.5 for 7492093	mtr-u.5 for 120578221	mtr-u.5 for 11410747	mtr-u.5 for 11429705	sly-u.5 for 101247122	sly-u.5 for CIP2a	sly-u.5 for CIP2b	sot-r.1 for 102577612	sot-r.1 for 102587685	sot-r.1 for 102597101	nta-r.1 for 107828294	nta-r.1 for 107765408	nta-r.1 for 107797519	osa-u.5 for 4347391	osa-u.5 for 4328444	osa-u.5 for 4341785	zma-u.5 for 100283252	zma-u.5 for 100277570	zma-u.5 for 100273685	tae-r.2 for 123162727	tae-r.2 for 123121862	tae-r.2 for 123112331	hvu-r.1 for 123408918	hvu-r.1 for 123449145	sbi-r.1 for 8071112	sbi-r.1 for 8055845	sbi-r.1 for 8067022	bdi-r.1 for 100832359	bdi-r.1 for 100836803	bdi-r.1 for 100838294	cre-r.1 for CHLRE_12g556400v5

Ortholog

Ortholog ID: 623

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

NF-YC4

NF-YC9

NF-YC07

NF-YC04

NF-YC06

CIP2a

CIP2b

Function^*

nuclear transcription factor Y subunit C-1-like

nuclear transcription factor Y subunit C-2

nuclear transcription factor Y subunit C-4

nuclear transcription factor Y subunit C-9

nuclear transcription factor Y subunit C-2

nuclear transcription factor Y subunit C-1

nuclear factor Y, subunit C4

nuclear factor Y, subunit C9

nuclear transcription factor Y subunit C-2

nuclear transcription factor Y subunit C-9

nuclear transcription factor Y subunit C-1

nuclear transcription factor Y subunit C-9

nuclear transcription factor Y subunit C-2

nuclear factor Y transcription factor family protein

nuclear transcription factor Y subunit C-2

nuclear transcription factor Y subunit C-3

nuclear transcription factor Y subunit C-1

nuclear transcription factor Y subunit C-9

nuclear transcription factor Y subunit C-3

nuclear transcription factor Y subunit C-1

nuclear transcription factor Y subunit C-3

nuclear transcription factor Y subunit C-1

CONSTANS interacting protein 2a

CONSTANS interacting protein 2b

uncharacterized LOC102577612

nuclear transcription factor Y subunit C-9-like

nuclear transcription factor Y subunit C-1-like

nuclear transcription factor Y subunit C-1

nuclear transcription factor Y subunit C-1-like

nuclear transcription factor Y subunit C-3

nuclear transcription factor Y subunit C-4-like

nuclear transcription factor Y subunit C-6-like

nuclear transcription factor Y subunit C-2-like

nuclear transcription factor Y subunit C-2

uncharacterized LOC100217109

nuclear transcription factor Y subunit C-1

nuclear transcription factor Y subunit C-4

nuclear transcription factor Y subunit C-2

nuclear transcription factor Y subunit C-6

nuclear transcription factor Y subunit C-6-like

nuclear transcription factor Y subunit C-2-like

nuclear transcription factor Y subunit C-6-like

nuclear transcription factor Y subunit C-6

nuclear transcription factor Y subunit C-4

nuclear transcription factor Y subunit C-2-like

nuclear transcription factor Y subunit C-6

nuclear transcription factor Y subunit C-4

nuclear transcription factor Y subunit C-6

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00100	Steroid biosynthesis	2
bna04142	Lysosome	2
bna04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00564	Glycerophospholipid metabolism	2
bna00100	Steroid biosynthesis	2
bna04142	Lysosome	2
bna04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	3
bra03083	Polycomb repressive complex	2
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	3
bra00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	2
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	9
ath03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04814	Motor proteins	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	2
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	2
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	4
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4
ppo00860	Porphyrin metabolism	3
ppo01240	Biosynthesis of cofactors	3
ppo04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	2
zma04120	Ubiquitin mediated proteolysis	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01200	Carbon metabolism	3
zma00196	Photosynthesis - antenna proteins	2
zma00710	Carbon fixation by Calvin cycle	2
zma00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00460	Cyanoamino acid metabolism	3
tae00500	Starch and sucrose metabolism	3
tae00999	Biosynthesis of various plant secondary metabolites	3
tae00630	Glyoxylate and dicarboxylate metabolism	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00195	Photosynthesis	8
hvu00196	Photosynthesis - antenna proteins	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	2
hvu00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03083	Polycomb repressive complex	3
bdi04120	Ubiquitin mediated proteolysis	3
bdi04141	Protein processing in endoplasmic reticulum	3
bdi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03030	DNA replication	2
bdi03410	Base excision repair	2
bdi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01240	Biosynthesis of cofactors	2
cre03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

125610289

106353197

106406926

103843367

103830155

103873128

836466

837417

107920899

107887675

107939338

102617055

102609372

102628121

100776494

100818447

100796987

100243367

100266507

100259532

7454724

18102323

11410747

11429705

11429780

101247122

778347

778249

102577612

102587685

102603380

107797519

107820349

107832065

4341785

4345928

9266204

100273685

100217109

100281601

123162727

123092752

123167754

123408918

123449145

123399206

8055845

8061586

110431645

100832359

100840477

100842288

5719754

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Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	3	3	3	3	3	3	3	3	3	3	2	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106430812 (bna-r.1 coexpression data)

Top 50 enrichment test to 106430812 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**