ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106434060	protein PHR1-LIKE 2
bna-r.1	125600539	protein PHR1-LIKE 2-like
bna-r.1	BNAC03G43430D	protein PHR1-LIKE 2
bna-r.1	106412234	protein PHR1-LIKE 3
bra-r.6	103831963	protein PHR1-LIKE 2
bra-r.6	103828672	protein PHR1-LIKE 2
bra-r.6	103860014	protein PHR1-LIKE 2
ath-u.5	AT3G24120	Homeodomain-like superfamily protein
ath-u.5	UNE16	Homeodomain-like superfamily protein
ghi-r.1	107936319	protein PHR1-LIKE 3
ghi-r.1	107927729	protein PHR1-LIKE 3
ghi-r.1	107914828	protein PHR1-LIKE 3
cit-r.1	102617659	protein PHR1-LIKE 3
cit-r.1	102627703	protein PHR1-LIKE 3-like
gma-u.5	PHR35	MYB-CC domain-containing transcription factor PHR35
gma-u.5	PHR24	MYB-CC domain-containing transcription factor PHR24
gma-u.5	PHR13	MYB-CC domain-containing transcription factor PHR13
vvi-u.5	100253272	protein PHR1-LIKE 2
vvi-u.5	100250267	protein PHR1-LIKE 2
ppo-u.5	18106010	protein PHR1-LIKE 3
ppo-u.5	7461665	protein PHR1-LIKE 3
ppo-u.5	7461287	protein PHR1-LIKE 3
mtr-u.5	25484812	protein PHR1-LIKE 3
mtr-u.5	11407502	protein PHR1-LIKE 2
sly-u.5	101251768	protein PHR1-LIKE 3
sly-u.5	101263547	protein PHR1-LIKE 3-like
sly-u.5	101262095	protein PHR1-LIKE 3-like
sot-r.1	102590000	uncharacterized LOC102590000
sot-r.1	102605067	myb family transcription factor APL-like
sot-r.1	102586388	myb family transcription factor APL-like
nta-r.1	107764626	protein PHR1-LIKE 3
nta-r.1	107808151	protein PHR1-LIKE 3
nta-r.1	107790657	protein PHR1-LIKE 3-like
osa-u.5	4345340	protein PHR1-LIKE 3
osa-u.5	4346660	protein PHR1-LIKE 2
zma-u.5	100272614	uncharacterized LOC100272614
zma-u.5	100282824	myb family transcription factor-related protein
zma-u.5	100282682	myb family transcription factor-related protein
tae-r.2	123111660	protein PHR1-LIKE 2
tae-r.2	123121139	protein PHR1-LIKE 2
tae-r.2	123103457	protein PHR1-LIKE 2
hvu-r.1	123453061	protein PHR1-LIKE 2-like
sbi-r.1	8064667	protein PHR1-LIKE 3
bdi-r.1	100838525	protein PHR1-LIKE 2
bdi-r.1	100831869	protein PHR1-LIKE 2

Top 50 coexpressed genes to 106434060 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106434060 (bna-r.1 coexpression data)

CoexMap"106434060"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003700 [list] [network] DNA-binding transcription factor activity	(3791 genes)	IEA
GO:0003677 [list] [network] DNA binding	(6522 genes)	IEA

Protein

XP_013730350.3 [sequence] [blastp]
XP_048592600.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, nucl_plas 4, chlo 1	(predict for XP_013730350.3)
nucl 9, nucl_plas 5	(predict for XP_048592600.1)

Subcellular
localization
TargetP

other 8, mito 3	(predict for XP_013730350.3)
other 8, mito 3	(predict for XP_048592600.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106434060	bna-r.1 for 125600539	bna-r.1 for BNAC03G43430D	bna-r.1 for 106412234	bra-r.6 for 103831963	bra-r.6 for 103828672	bra-r.6 for 103860014	ath-u.5 for AT3G24120	ath-u.5 for UNE16	ghi-r.1 for 107936319	ghi-r.1 for 107927729	ghi-r.1 for 107914828	cit-r.1 for 102617659	cit-r.1 for 102627703	gma-u.5 for PHR35	gma-u.5 for PHR24	gma-u.5 for PHR13	vvi-u.5 for 100253272	vvi-u.5 for 100250267	ppo-u.5 for 18106010	ppo-u.5 for 7461665	ppo-u.5 for 7461287	mtr-u.5 for 25484812	mtr-u.5 for 11407502	sly-u.5 for 101251768	sly-u.5 for 101263547	sly-u.5 for 101262095	sot-r.1 for 102590000	sot-r.1 for 102605067	sot-r.1 for 102586388	nta-r.1 for 107764626	nta-r.1 for 107808151	nta-r.1 for 107790657	osa-u.5 for 4345340	osa-u.5 for 4346660	zma-u.5 for 100272614	zma-u.5 for 100282824	zma-u.5 for 100282682	tae-r.2 for 123111660	tae-r.2 for 123121139	tae-r.2 for 123103457	hvu-r.1 for 123453061	sbi-r.1 for 8064667	bdi-r.1 for 100838525	bdi-r.1 for 100831869

Ortholog

Ortholog ID: 2908

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

UNE16

PHR35

PHR13

PHR18

Function^*

protein PHR1-LIKE 2

protein PHR1-LIKE 2-like

protein PHR1-LIKE 2

Homeodomain-like superfamily protein

protein PHR1-LIKE 3

protein PHR1-LIKE 2

protein PHR1-LIKE 3

protein PHR1-LIKE 3-like

MYB-CC domain-containing transcription factor PHR35

MYB-CC domain-containing transcription factor PHR13

MYB-CC domain-containing transcription factor PHR18

protein PHR1-LIKE 2

protein PHR1-LIKE 3

protein PHR1-LIKE 2

protein PHR1-LIKE 3

protein PHR1-LIKE 3-like

uncharacterized LOC102590000

myb family transcription factor APL-like

protein PHR1-LIKE 3-like

protein PHR1-LIKE 3

protein PHR1-LIKE 2-like

protein PHR1-LIKE 3

protein PHR1-LIKE 2

uncharacterized LOC100272614

myb family transcription factor-related protein

protein PHR1-LIKE 2

protein PHR1-LIKE 2-like

protein PHR1-LIKE 3

protein PHR1-LIKE 2

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	7
bna00310	Lysine degradation	2
bna04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	3
gma00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	4
vvi04120	Ubiquitin mediated proteolysis	3
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04130	SNARE interactions in vesicular transport	2
ppo04136	Autophagy - other	2
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00905	Brassinosteroid biosynthesis	3
mtr00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03060	Protein export	3
sly04141	Protein processing in endoplasmic reticulum	3
sly04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	4
sot04136	Autophagy - other	4
sot04382	Cornified envelope formation	4
sot00510	N-Glycan biosynthesis	2
sot00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00904	Diterpenoid biosynthesis	3
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00904	Diterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	3
nta01232	Nucleotide metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	3
nta01232	Nucleotide metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	2
osa00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae04120	Ubiquitin mediated proteolysis	3
tae04141	Protein processing in endoplasmic reticulum	3
tae00020	Citrate cycle (TCA cycle)	3
tae00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

106434060

125600539

106451495

103831963

103828672

103860014

821998

826998

107936319

107939362

121206278

102617659

102627703

100811831

100782369

100779871

100253272

100250267

18106010

7461665

7461287

25484812

11407502

101251768

101263547

101262095

102590000

102605067

102586388

107790657

107778664

107828561

4345340

4346660

100272614

100282824

100282682

123111660

123121139

123103457

123453061

8064667

100838525

100831869

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	2	3	2	3	2	3	2	3	3	3	2	3	3	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106434060 (bna-r.1 coexpression data)

Top 50 enrichment test to 106434060 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**