ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT2G29065	GRAS family transcription factor
ath-r.7	AT2G29065	GRAS family transcription factor
ath-e.2	AT2G29065	GRAS family transcription factor
ath-u.5	AT2G37650	GRAS family transcription factor
ath-u.5	AT3G46600	GRAS family transcription factor
ath-u.5	AT5G59450	GRAS family transcription factor
gma-u.5	100807788	scarecrow-like protein 9
gma-u.5	100801824	scarecrow-like protein 9
gma-u.5	100796903	scarecrow-like protein 14
vvi-u.5	100264982	scarecrow-like protein 30
vvi-u.5	100252795	scarecrow-like protein 9
ppo-u.5	7488108	scarecrow-like protein 33
ppo-u.5	7488109	scarecrow-like protein 14
ppo-u.5	7487261	scarecrow-like protein 9
mtr-u.5	25487896	scarecrow-like protein 30
mtr-u.5	25498496	scarecrow-like protein 9
mtr-u.5	11415946	scarecrow-like protein 14
sly-u.5	101249397	scarecrow-like protein 9
sly-u.5	GRAS4	GRAS4
sly-u.5	101256274	scarecrow-like protein 14
osa-u.5	4327499	scarecrow-like protein 9
osa-u.5	4333775	scarecrow-like protein 9
osa-u.5	4336820	scarecrow-like protein 9
zma-u.5	103644258	scarecrow-like protein 30

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_001189628.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto_nucl 3, vacu 1, cyto_pero 1, pero 1, chlo 1, cyto 1, plas 1, E.R._vacu 1

(predict for NP_001189628.1)

Subcellular
localization
TargetP

other 8

(predict for NP_001189628.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT2G29065	ath-r.7 for AT2G29065	ath-e.2 for AT2G29065	ath-u.5 for AT2G37650	ath-u.5 for AT3G46600	ath-u.5 for AT5G59450	gma-u.5 for 100807788	gma-u.5 for 100801824	gma-u.5 for 100796903	vvi-u.5 for 100264982	vvi-u.5 for 100252795	ppo-u.5 for 7488108	ppo-u.5 for 7488109	ppo-u.5 for 7487261	mtr-u.5 for 25487896	mtr-u.5 for 25498496	mtr-u.5 for 11415946	sly-u.5 for 101249397	sly-u.5 for GRAS4	sly-u.5 for 101256274	osa-u.5 for 4327499	osa-u.5 for 4333775	osa-u.5 for 4336820	zma-u.5 for 103644258

Ortholog

Ortholog ID: 352

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

sbi

bdi

Symbol

Function^*

GRAS family transcription factor

scarecrow-like protein 14

scarecrow-like protein 9

scarecrow-like protein 11

scarecrow-like protein 30

scarecrow-like protein 33

scarecrow-like protein 30

scarecrow-like protein 9

scarecrow-like protein 31

scarecrow-like protein 30

scarecrow-like protein 33

scarecrow-like protein 9

scarecrow-like protein 30

scarecrow-like protein 11

scarecrow-like protein 14

scarecrow-like protein 9

uncharacterized LOC100216906

scarecrow-like protein 9

scarecrow-like protein 30

scarecrow-like protein 9

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	3
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	3
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01230	Biosynthesis of amino acids	7
vvi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
vvi00010	Glycolysis / Gluconeogenesis	3
vvi01200	Carbon metabolism	3
vvi00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04016	MAPK signaling pathway - plant	3
mtr04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	3
sly04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04136	Autophagy - other	2
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00480	Glutathione metabolism	9
sot00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2
nta04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00670	One carbon pool by folate	2
osa04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	2
bdi04136	Autophagy - other	2

Expression

Expression pattern

Entrez Gene ID^*

823813

10723125

103836438

103857726

106420491

106376460

107906564

107900465

102621708

102622070

100801824

121173030

100264982

7485697

7487261

25487896

25487897

101246721

101256274

102585418

102598749

107826445

107802916

4327499

100216906

8058890

8057357

100824633

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT2G29065 (ath-u.5 coexpression data)

Top 50 enrichment test to AT2G29065 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	6	3	2	3	3	3	3	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT2G29065 (ath-u.5 coexpression data)

Top 50 enrichment test to AT2G29065 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**