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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107769861   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 sly-u.5   104644275   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 ath-u.5   AT3G22150   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100798734   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 vvi-u.5   100256920   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 ppo-u.5   7463661   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 mtr-u.5   11421785   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 osa-u.5   4336891   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 

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Top 50 coexpressed genes to 107769861 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107769861 (nta-r.1 coexpression data)

CoexMap"107769861"


ntaLOC107769861 | Entrez gene ID : 107769861      
Species nta sly ath gma vvi ppo mtr osa bdi hvu bra cit bna sbi ghi sot cre tae zma
Paralog 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (732 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (2607 genes)  IEA  
GO:0005515 [list] [network] protein binding  (7685 genes)  IEA  
Protein XP_016444601.2 [sequence] [blastp]
XP_075082632.1 [sequence] [blastp]
XP_075082633.1 [sequence] [blastp]
XP_075082634.1 [sequence] [blastp]
XP_075082635.1 [sequence] [blastp]
XP_075082636.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 8,  E.R. 1  (predict for XP_016444601.2)
plas 8,  E.R. 1  (predict for XP_075082632.1)
plas 8,  E.R. 1  (predict for XP_075082633.1)
plas 8,  E.R. 1  (predict for XP_075082634.1)
plas 8,  E.R. 1  (predict for XP_075082635.1)
plas 8,  E.R. 1  (predict for XP_075082636.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_016444601.2)
chlo 9  (predict for XP_075082632.1)
chlo 9  (predict for XP_075082633.1)
chlo 9  (predict for XP_075082634.1)
chlo 9  (predict for XP_075082635.1)
chlo 9  (predict for XP_075082636.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107769861
sly-u.5
for
104644275
ath-u.5
for
AT3G22150
gma-u.5
for
100798734
vvi-u.5
for
100256920
ppo-u.5
for
7463661
mtr-u.5
for
11421785
osa-u.5
for
4336891


Ortholog ID: 11961
Species nta nta sly sot ath gma bra vvi ppo mtr ghi ghi bna cit osa tae tae hvu sbi bdi
Symbol LOC107769861 LOC107813223 LOC104644275 LOC102578445 AT3G22150 LOC100798734 LOC103849794 LOC100256920 LOC7463661 LOC11421785 LOC107954753 LOC107952838 LOC106439812 LOC102628643 LOC4336891 LOC123190280 LOC123054397 LOC123427710 LOC8063926 LOC100832407
Function* pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic-like pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic-like Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
hvu00860 Porphyrin metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107769861 107813223 104644275 102578445 821779 100798734 103849794 100256920 7463661 11421785 107954753 107952838 106439812 102628643 4336891 123190280 123054397 123427710 8063926 100832407
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