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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107954753   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 ghi-r.1   107952838   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 ath-u.5   AT3G22150   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103849794   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 bna-r.1   106439812   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 cit-r.1   102628643   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 gma-u.5   100798734   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 vvi-u.5   100256920   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 ppo-u.5   7463661   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 mtr-u.5   11421785   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 sly-u.5   104644275   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 sot-r.1   102578445   pentatricopeptide repeat-containing protein At3g22150, chloroplastic-like 
 nta-r.1   107769861   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 nta-r.1   107813223   pentatricopeptide repeat-containing protein At3g22150, chloroplastic-like 
 osa-u.5   4336891   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 tae-r.2   123190280   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 tae-r.2   123054397   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 tae-r.2   123046540   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 hvu-r.1   123427710   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 sbi-r.1   8063926   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 
 bdi-r.1   100832407   pentatricopeptide repeat-containing protein At3g22150, chloroplastic 

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Top 50 coexpressed genes to 107954753 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107954753 (ghi-r.1 coexpression data)

CoexMap"107954753"


ghiLOC107954753 | Entrez gene ID : 107954753    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa tae hvu sbi bdi zma cre
Paralog 2 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (557 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (14879 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016745899.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  plas 1  (predict for XP_016745899.2)
Subcellular
localization
TargetP
chlo 9  (predict for XP_016745899.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107954753
ghi-r.1
for
107952838
ath-u.5
for
AT3G22150
bra-r.6
for
103849794
bna-r.1
for
106439812
cit-r.1
for
102628643
gma-u.5
for
100798734
vvi-u.5
for
100256920
ppo-u.5
for
7463661
mtr-u.5
for
11421785
sly-u.5
for
104644275
sot-r.1
for
102578445
nta-r.1
for
107769861
nta-r.1
for
107813223
osa-u.5
for
4336891
tae-r.2
for
123190280
tae-r.2
for
123054397
tae-r.2
for
123046540
hvu-r.1
for
123427710
sbi-r.1
for
8063926
bdi-r.1
for
100832407


Ortholog ID: 11961
Species ghi ghi ath bra bna cit gma vvi ppo mtr sly sot nta nta osa tae tae tae hvu sbi bdi
Symbol LOC107954753 LOC107952838 AT3G22150 LOC103849794 LOC106439812 LOC102628643 LOC100798734 LOC100256920 LOC7463661 LOC11421785 LOC104644275 LOC102578445 LOC107769861 LOC107813223 LOC4336891 LOC123190280 LOC123054397 LOC123046540 LOC123427710 LOC8063926 LOC100832407
Function* pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic-like pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic-like pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic pentatricopeptide repeat-containing protein At3g22150, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
hvu00860 Porphyrin metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107954753 107952838 821779 103849794 106439812 102628643 100798734 100256920 7463661 11421785 104644275 102578445 107769861 107813223 4336891 123190280 123054397 123046540 123427710 8063926 100832407
The preparation time of this page was 1.6 [sec].