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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107780218   small ribosomal subunit protein mL104 (rPPR9)-like 
 nta-r.1   107828769   small ribosomal subunit protein mL104 (rPPR9) 
 sly-u.5   101259522   pentatricopeptide repeat-containing protein 
 sot-r.1   102585028   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 ath-u.5   PNM1   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100808101   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 gma-u.5   100782387   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 bra-r.6   103860557   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 vvi-u.5   100262070   small ribosomal subunit protein mL104 (rPPR9) 
 ppo-u.5   18106607   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 mtr-u.5   11442426   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 ghi-r.1   107951210   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 ghi-r.1   107946554   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 bna-r.1   106410618   pentatricopeptide repeat-containing protein PNM1, mitochondrial-like 
 bna-r.1   106439957   pentatricopeptide repeat-containing protein PNM1, mitochondrial-like 
 cit-r.1   102608328   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 osa-u.5   4343842   small ribosomal subunit protein mL104 (rPPR9) 
 zma-u.5   100274849   uncharacterized LOC100274849 
 tae-r.2   123052151   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 tae-r.2   123188009   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 tae-r.2   123044271   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 hvu-r.1   123425400   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 sbi-r.1   8079012   pentatricopeptide repeat-containing protein PNM1, mitochondrial 
 bdi-r.1   100838665   pentatricopeptide repeat-containing protein PNM1, mitochondrial 

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Top 50 coexpressed genes to 107780218 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107780218 (nta-r.1 coexpression data)

CoexMap"107780218"


ntaLOC107780218 | Entrez gene ID : 107780218      
Species nta sly sot ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 1 1 2 1 1 1 1 2 2 1 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (573 genes)  IEA  
GO:0005515 [list] [network] protein binding  (7685 genes)  IEA  
Protein XP_016456240.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo 3,  cyto_mito 2,  nucl 2  (predict for XP_016456240.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_016456240.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107780218
nta-r.1
for
107828769
sly-u.5
for
101259522
sot-r.1
for
102585028
ath-u.5
for
PNM1
gma-u.5
for
100808101
gma-u.5
for
100782387
bra-r.6
for
103860557
vvi-u.5
for
100262070
ppo-u.5
for
18106607
mtr-u.5
for
11442426
ghi-r.1
for
107951210
ghi-r.1
for
107946554
bna-r.1
for
106410618
bna-r.1
for
106439957
cit-r.1
for
102608328
osa-u.5
for
4343842
zma-u.5
for
100274849
tae-r.2
for
123052151
tae-r.2
for
123188009
tae-r.2
for
123044271
hvu-r.1
for
123425400
sbi-r.1
for
8079012
bdi-r.1
for
100838665


Ortholog ID: 11009
Species nta nta sly sot ath gma gma bra vvi ppo mtr ghi ghi bna bna cit osa zma tae tae tae hvu sbi bdi
Symbol LOC107780218 LOC107828769 LOC101259522 LOC102585028 PNM1 LOC100808101 LOC100782387 LOC103860557 LOC100262070 LOC18106607 LOC11442426 LOC107951210 LOC107946554 LOC106410618 LOC106439957 LOC102608328 LOC4343842 LOC100274849 LOC123052151 LOC123188009 LOC123044271 LOC123425400 LOC8079012 LOC100838665
Function* small ribosomal subunit protein mL104 (rPPR9)-like small ribosomal subunit protein mL104 (rPPR9) pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein PNM1, mitochondrial Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein PNM1, mitochondrial pentatricopeptide repeat-containing protein PNM1, mitochondrial pentatricopeptide repeat-containing protein PNM1, mitochondrial small ribosomal subunit protein mL104 (rPPR9) pentatricopeptide repeat-containing protein PNM1, mitochondrial pentatricopeptide repeat-containing protein PNM1, mitochondrial pentatricopeptide repeat-containing protein PNM1, mitochondrial pentatricopeptide repeat-containing protein PNM1, mitochondrial pentatricopeptide repeat-containing protein PNM1, mitochondrial-like pentatricopeptide repeat-containing protein PNM1, mitochondrial-like pentatricopeptide repeat-containing protein PNM1, mitochondrial small ribosomal subunit protein mL104 (rPPR9) uncharacterized LOC100274849 pentatricopeptide repeat-containing protein PNM1, mitochondrial pentatricopeptide repeat-containing protein PNM1, mitochondrial pentatricopeptide repeat-containing protein PNM1, mitochondrial pentatricopeptide repeat-containing protein PNM1, mitochondrial pentatricopeptide repeat-containing protein PNM1, mitochondrial pentatricopeptide repeat-containing protein PNM1, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 8
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
zma00230 Purine metabolism 2
zma01232 Nucleotide metabolism 2
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 5
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107780218 107828769 101259522 102585028 836217 100808101 100782387 103860557 100262070 18106607 11442426 107951210 107946554 106410618 106439957 102608328 4343842 100274849 123052151 123188009 123044271 123425400 8079012 100838665
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