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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107796155   sm-like protein LSM8 
 nta-r.1   107774569   sm-like protein LSM8 
 sly-u.5   101267415   sm-like protein LSM8 
 sot-r.1   102588843   sm-like protein LSM8 
 ath-u.5   LSM8   Small nuclear ribonucleoprotein family protein 
 gma-u.5   100809048   sm-like protein LSM8 
 gma-u.5   100305829   uncharacterized LOC100305829 
 bra-r.6   103852294   sm-like protein LSM8 
 bra-r.6   103831065   sm-like protein LSM8 
 vvi-u.5   100247782   sm-like protein LSM8 
 ppo-u.5   7463898   sm-like protein LSM8 
 mtr-u.5   25493016   sm-like protein LSM8 
 ghi-r.1   107942751   sm-like protein LSM8 
 ghi-r.1   107939866   sm-like protein LSM8 
 ghi-r.1   107938625   sm-like protein LSM8 
 bna-r.1   111199285   sm-like protein LSM8 
 bna-r.1   125596356   sm-like protein LSM8 
 bna-r.1   106426215   sm-like protein LSM8 
 cit-r.1   102610236   sm-like protein LSM8 
 osa-u.5   4339810   sm-like protein LSM8 
 zma-u.5   100284021   uncharacterized LOC100284021 
 tae-r.2   123071084   sm-like protein LSM8 
 tae-r.2   123150004   sm-like protein LSM8 
 tae-r.2   123183428   sm-like protein LSM8 
 hvu-r.1   123452804   sm-like protein LSM8 
 sbi-r.1   110430611   sm-like protein LSM8 
 bdi-r.1   100838688   sm-like protein LSM8 
 cre-r.1   CHLRE_02g142850v5   uncharacterized protein 

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Top 50 coexpressed genes to 107796155 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107796155 (nta-r.1 coexpression data)

CoexMap"107796155"


ntaLOC107796155 | Entrez gene ID : 107796155    
Species nta sly sot ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 1 1 1 2 2 1 1 1 3 3 1 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG nta03018 [list] [network] RNA degradation (211 genes)
nta03040 [list] [network] Spliceosome (402 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (282 genes)  IEA  
GO CC
GO:0005688 [list] [network] U6 snRNP  (9 genes)  IEA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (41 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (42 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (573 genes)  IEA  
Protein XP_016474385.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  mito 1,  extr 1,  chlo 1,  nucl 1,  cysk 1,  cyto_mito 1,  cysk_nucl 1,  mito_plas 1  (predict for XP_016474385.1)
Subcellular
localization
TargetP
other 7  (predict for XP_016474385.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107796155
nta-r.1
for
107774569
sly-u.5
for
101267415
sot-r.1
for
102588843
ath-u.5
for
LSM8
gma-u.5
for
100809048
gma-u.5
for
100305829
bra-r.6
for
103852294
bra-r.6
for
103831065
vvi-u.5
for
100247782
ppo-u.5
for
7463898
mtr-u.5
for
25493016
ghi-r.1
for
107942751
ghi-r.1
for
107939866
ghi-r.1
for
107938625
bna-r.1
for
111199285
bna-r.1
for
125596356
bna-r.1
for
106426215
cit-r.1
for
102610236
osa-u.5
for
4339810
zma-u.5
for
100284021
tae-r.2
for
123071084
tae-r.2
for
123150004
tae-r.2
for
123183428
hvu-r.1
for
123452804
sbi-r.1
for
110430611
bdi-r.1
for
100838688
cre-r.1
for
CHLRE_02g142850v5


Ortholog ID: 7455
Species nta nta sly sot ath gma gma bra bra vvi ppo mtr ghi ghi ghi bna bna cit osa zma tae tae tae hvu sbi bdi cre
Symbol LOC107796155 LOC107774569 LOC101267415 LOC102588843 LSM8 LOC100809048 LOC100305829 LOC103852294 LOC103831065 LOC100247782 LOC7463898 LOC25493016 LOC107939866 LOC107938625 LOC107916624 LOC111199285 LOC106426215 LOC102610236 LOC4339810 LOC100284021 LOC123071084 LOC123150004 LOC123183428 LOC123452804 LOC110430611 LOC100838688 CHLRE_02g142850v5
Function* sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 Small nuclear ribonucleoprotein family protein sm-like protein LSM8 uncharacterized LOC100305829 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 uncharacterized LOC100284021 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 9
nta03018 RNA degradation 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta03018 RNA degradation 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 3
sly03040 Spliceosome 3
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03018 RNA degradation 3
ath03020 RNA polymerase 3
ath03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03010 Ribosome 5
gma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 7
bra03040 Spliceosome 3
bra03440 Homologous recombination 2
bra03018 RNA degradation 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 10
ppo03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 15
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 4
ghi03018 RNA degradation 4
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 5
ghi03018 RNA degradation 4
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit03040 Spliceosome 4
cit03018 RNA degradation 3
cit04122 Sulfur relay system 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 10
zma03018 RNA degradation 3
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae03040 Spliceosome 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 11
tae03040 Spliceosome 4
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 7
hvu03040 Spliceosome 4
hvu03018 RNA degradation 3
hvu03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 8
sbi03018 RNA degradation 4
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
bdi03010 Ribosome 7
bdi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107796155 107774569 101267415 102588843 842881 100809048 100305829 103852294 103831065 100247782 7463898 25493016 107939866 107938625 107916624 111199285 106426215 102610236 4339810 100284021 123071084 123150004 123183428 123452804 110430611 100838688 5720453
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