ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-u.5	100284021	uncharacterized LOC100284021
zma-r.6	100284021	uncharacterized LOC100284021
zma-m.5	100284021	uncharacterized LOC100284021
sbi-r.1	110430611	sm-like protein LSM8
osa-u.5	4339810	sm-like protein LSM8
tae-r.2	123071084	sm-like protein LSM8
tae-r.2	123150004	sm-like protein LSM8
tae-r.2	123183428	sm-like protein LSM8
hvu-r.1	123452804	sm-like protein LSM8
bdi-r.1	100838688	sm-like protein LSM8
ath-u.5	LSM8	Small nuclear ribonucleoprotein family protein
gma-u.5	100809048	sm-like protein LSM8
gma-u.5	100305829	uncharacterized LOC100305829
sly-u.5	101267415	sm-like protein LSM8
bra-r.6	103852294	sm-like protein LSM8
bra-r.6	103831065	sm-like protein LSM8
vvi-u.5	100247782	sm-like protein LSM8
ppo-u.5	7463898	sm-like protein LSM8
mtr-u.5	25493016	sm-like protein LSM8
ghi-r.1	107942751	sm-like protein LSM8
ghi-r.1	107939866	sm-like protein LSM8
ghi-r.1	107938625	sm-like protein LSM8
bna-r.1	111199285	sm-like protein LSM8
bna-r.1	125596356	sm-like protein LSM8
bna-r.1	106379447	sm-like protein LSM8
sot-r.1	102588843	sm-like protein LSM8
cit-r.1	102610236	sm-like protein LSM8
nta-r.1	107774569	sm-like protein LSM8
nta-r.1	107796155	sm-like protein LSM8
cre-r.1	CHLRE_02g142850v5	uncharacterized protein

Annotation

functional annotation

KEGG

zma03018 [list] [network] RNA degradation (140 genes)

zma03040 [list] [network] Spliceosome (506 genes)

GO BP

GO:0000398 [list] [network] mRNA splicing, via spliceosome

(175 genes)

IEA

GO CC

GO:0005688 [list] [network] U6 snRNP	(8 genes)	IEA
GO:0071011 [list] [network] precatalytic spliceosome	(23 genes)	IEA
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex	(31 genes)	IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(346 genes)

IEA

Protein

NP_001150391.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, mito 1, extr 1, nucl 1, E.R. 1, chlo_mito 1, cyto_mito 1, mito_plas 1

(predict for NP_001150391.1)

Subcellular
localization
TargetP

other 7

(predict for NP_001150391.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100284021	zma-r.6 for 100284021	zma-m.5 for 100284021	sbi-r.1 for 110430611	osa-u.5 for 4339810	tae-r.2 for 123071084	tae-r.2 for 123150004	tae-r.2 for 123183428	hvu-r.1 for 123452804	bdi-r.1 for 100838688	ath-u.5 for LSM8	gma-u.5 for 100809048	gma-u.5 for 100305829	sly-u.5 for 101267415	bra-r.6 for 103852294	bra-r.6 for 103831065	vvi-u.5 for 100247782	ppo-u.5 for 7463898	mtr-u.5 for 25493016	ghi-r.1 for 107942751	ghi-r.1 for 107939866	ghi-r.1 for 107938625	bna-r.1 for 111199285	bna-r.1 for 125596356	bna-r.1 for 106379447	sot-r.1 for 102588843	cit-r.1 for 102610236	nta-r.1 for 107774569	nta-r.1 for 107796155	cre-r.1 for CHLRE_02g142850v5

Ortholog

Ortholog ID: 7455

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

LSM8

Function^*

uncharacterized LOC100284021

sm-like protein LSM8

Small nuclear ribonucleoprotein family protein

sm-like protein LSM8

uncharacterized LOC100305829

sm-like protein LSM8

uncharacterized protein

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	10
zma03018	RNA degradation	3
zma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	8
sbi03018	RNA degradation	4
sbi03020	RNA polymerase	2
sbi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3
osa03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3
tae03040	Spliceosome	3
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	11
tae03040	Spliceosome	4
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	2
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	7
hvu03040	Spliceosome	4
hvu03018	RNA degradation	3
hvu03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	8
bdi03010	Ribosome	7
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	8
ath03018	RNA degradation	3
ath03020	RNA polymerase	3
ath03420	Nucleotide excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	6
gma03010	Ribosome	5
gma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	3
sly03040	Spliceosome	3
sly03020	RNA polymerase	2
sly03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	7
bra03040	Spliceosome	3
bra03440	Homologous recombination	2
bra03018	RNA degradation	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	3
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	10
ppo03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	15
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	8
ghi03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	4
ghi03018	RNA degradation	4
ghi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	5
ghi03018	RNA degradation	4
ghi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	6
cit03040	Spliceosome	4
cit03018	RNA degradation	3
cit04122	Sulfur relay system	2
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	6
nta03018	RNA degradation	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	9
nta03018	RNA degradation	2
nta03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

100284021

110430611

4339810

123071084

123150004

123183428

123452804

100838688

842881

100809048

100305829

101267415

103852294

103831065

100247782

7463898

25493016

107939866

107938625

107916624

111199285

106426215

102588843

102610236

107774569

107796155

5720453

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100284021 (zma-u.5 coexpression data)

Top 50 enrichment test to 100284021 (zma-u.5 coexpression data)


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	1	1	3	1	1	1	2	1	2	1	1	1	3	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100284021 (zma-u.5 coexpression data)

Top 50 enrichment test to 100284021 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**