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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106379447   sm-like protein LSM8 
 ath-u.5   LSM8   Small nuclear ribonucleoprotein family protein 
 gma-u.5   100809048   sm-like protein LSM8 
 gma-u.5   100305829   uncharacterized LOC100305829 
 vvi-u.5   100247782   sm-like protein LSM8 
 ppo-u.5   7463898   sm-like protein LSM8 
 mtr-u.5   25493016   sm-like protein LSM8 
 sly-u.5   101267415   sm-like protein LSM8 
 osa-u.5   4339810   sm-like protein LSM8 
 zma-u.5   100284021   uncharacterized LOC100284021 

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Top 50 coexpressed genes to 106379447 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106379447 (bna-r.1 coexpression data)

CoexMap"106379447"


bnaLOC106379447 | Entrez gene ID : 106379447    
Species bna ath gma vvi ppo mtr sly osa zma nta tae bdi sot bra sbi hvu cit cre ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03018 [list] [network] RNA degradation (380 genes)
bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (548 genes)  IEA  
GO CC
GO:0005688 [list] [network] U6 snRNP  (34 genes)  IEA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (91 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (154 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_013674852.1 [sequence] [blastp]
XP_013674853.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  cyto 3,  mito 2,  cyto_E.R. 2  (predict for XP_013674852.1)
chlo 3,  cyto 3,  mito 2,  cyto_E.R. 2  (predict for XP_013674853.1)
Subcellular
localization
TargetP
other 7  (predict for XP_013674852.1)
other 7  (predict for XP_013674853.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106379447

.
ath-u.5
for
LSM8

.
gma-u.5
for
100809048

.
gma-u.5
for
100305829

.
vvi-u.5
for
100247782

.
ppo-u.5
for
7463898

.
mtr-u.5
for
25493016

.
sly-u.5
for
101267415

.
osa-u.5
for
4339810

.
zma-u.5
for
100284021

.


Ortholog ID: 7455
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna cre sbi sot cit bdi nta nta
Symbol LSM8 LOC100809048 LOC100305829 LOC101267415 LOC4339810 LOC100284021 LOC103852294 LOC103831065 LOC100247782 LOC7463898 LOC25493016 LOC123183428 LOC123071084 LOC123452804 LOC107939866 LOC107938625 LOC111199285 CHLRE_02g142850v5 LOC110430611 LOC102588843 LOC102610236 LOC100838688 LOC107774569 LOC107796155
Function* Small nuclear ribonucleoprotein family protein sm-like protein LSM8 uncharacterized LOC100305829 sm-like protein LSM8 sm-like protein LSM8 uncharacterized LOC100284021 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 uncharacterized protein sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8 sm-like protein LSM8
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03018 RNA degradation 3
ath03020 RNA polymerase 3
ath03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03010 Ribosome 5
gma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 3
sly03040 Spliceosome 3
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 10
zma03018 RNA degradation 3
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 7
bra03040 Spliceosome 3
bra03440 Homologous recombination 2
bra03018 RNA degradation 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 10
ppo03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 15
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae03040 Spliceosome 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 7
hvu03040 Spliceosome 4
hvu03018 RNA degradation 3
hvu03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 4
ghi03018 RNA degradation 4
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 8
sbi03018 RNA degradation 4
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit03040 Spliceosome 4
cit03018 RNA degradation 3
cit04122 Sulfur relay system 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
bdi03010 Ribosome 7
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta03018 RNA degradation 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 9
nta03018 RNA degradation 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842881 100809048 100305829 101267415 4339810 100284021 103852294 103831065 100247782 7463898 25493016 123183428 123071084 123452804 107939866 107938625 111199285 5720453 110430611 102588843 102610236 100838688 107774569 107796155
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