ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107799997	SEC12-like protein 2
sly-u.5	101251489	SEC12-like protein 2
sly-u.5	101258215	SEC12-like protein 1
ath-u.5	STL2P	SEC12P-like 2 protein
ath-u.5	PHF1	phosphate transporter traffic facilitator1
ath-u.5	AT5G50550	Transducin/WD40 repeat-like superfamily protein
gma-u.5	100786727	SEC12-like protein 2
gma-u.5	100787360	SEC12-like protein 1
gma-u.5	100803472	SEC12-like protein 1
vvi-u.5	100251351	SEC12-like protein 1
vvi-u.5	100242169	SEC12-like protein 2
ppo-u.5	7468459	SEC12-like protein 1
ppo-u.5	7475526	SEC12-like protein 2
ppo-u.5	7482885	SEC12-like protein 2
mtr-u.5	25492998	SEC12-like protein 2
mtr-u.5	25484857	SEC12-like protein 1
osa-u.5	4350905	SEC12-like protein 2
osa-u.5	4342601	SEC12-like protein 1
osa-u.5	9270427	SEC12-like protein 1
zma-u.5	100382688	uncharacterized LOC100382688

Top 50 coexpressed genes to 107799997 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107799997 (nta-r.1 coexpression data)

CoexMap"107799997"

[Cytoscape]

Annotation

functional annotation

KEGG

nta04141 [list] [network] Protein processing in endoplasmic reticulum (495 genes)

GO BP

GO:0003400 [list] [network] regulation of COPII vesicle coating	(4 genes)	IEA
GO:0006888 [list] [network] endoplasmic reticulum to Golgi vesicle-mediated transport	(133 genes)	IEA

GO CC

GO:0005789 [list] [network] endoplasmic reticulum membrane

(424 genes)

IEA

GO MF

GO:0005085 [list] [network] guanyl-nucleotide exchange factor activity	(72 genes)	IEA
GO:0005515 [list] [network] protein binding	(7685 genes)	IEA

Protein

XP_016478625.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, nucl 1, vacu 1, E.R._vacu 1

(predict for XP_016478625.1)

Subcellular
localization
TargetP

other 6

(predict for XP_016478625.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107799997	sly-u.5 for 101251489	sly-u.5 for 101258215	ath-u.5 for STL2P	ath-u.5 for PHF1	ath-u.5 for AT5G50550	gma-u.5 for 100786727	gma-u.5 for 100787360	gma-u.5 for 100803472	vvi-u.5 for 100251351	vvi-u.5 for 100242169	ppo-u.5 for 7468459	ppo-u.5 for 7475526	ppo-u.5 for 7482885	mtr-u.5 for 25492998	mtr-u.5 for 25484857	osa-u.5 for 4350905	osa-u.5 for 4342601	osa-u.5 for 9270427	zma-u.5 for 100382688

Ortholog

Ortholog ID: 1648

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

tae

hvu

sbi

bdi

cre

Symbol

Function^*

SEC12-like protein 1

SEC12-like protein 2

SEC12-like protein 1

Transducin/WD40 repeat-like superfamily protein

SEC12-like protein 2

SEC12-like protein 1

SEC12-like protein 2

SEC12-like protein 1

SEC12-like protein 2

SEC12-like protein 1

SEC12-like protein 2

SEC12-like protein 1

SEC12-like protein 2

SEC12-like protein 1

SEC12-like protein 2

SEC12-like protein 1

SEC12-like protein 2

SEC12-like protein 1

uncharacterized LOC110431251

SEC12-like protein 1

SEC12-like protein 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	4
nta04141	Protein processing in endoplasmic reticulum	2
nta00566	Sulfoquinovose metabolism	2
nta04016	MAPK signaling pathway - plant	2
nta00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	4
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
nta01240	Biosynthesis of cofactors	2
nta00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	3
sly03015	mRNA surveillance pathway	2
sly03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3
sly03010	Ribosome	2
sly03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00240	Pyrimidine metabolism	2
sot01232	Nucleotide metabolism	2
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00240	Pyrimidine metabolism	2
sot01232	Nucleotide metabolism	2
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	3
ath04120	Ubiquitin mediated proteolysis	2
ath00510	N-Glycan biosynthesis	2
ath00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	3
ath04120	Ubiquitin mediated proteolysis	2
ath00510	N-Glycan biosynthesis	2
ath00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	3
bra03050	Proteasome	2
bra04142	Lysosome	2
bra04626	Plant-pathogen interaction	2
bra00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	3
vvi03040	Spliceosome	2
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00970	Aminoacyl-tRNA biosynthesis	3
vvi03013	Nucleocytoplasmic transport	2
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	6
ppo04145	Phagosome	6
ppo04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	3
ppo04141	Protein processing in endoplasmic reticulum	2
ppo04136	Autophagy - other	2
ppo04382	Cornified envelope formation	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01200	Carbon metabolism	6
ghi00710	Carbon fixation by Calvin cycle	4
ghi00020	Citrate cycle (TCA cycle)	3
ghi00270	Cysteine and methionine metabolism	3
ghi00566	Sulfoquinovose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3
tae04016	MAPK signaling pathway - plant	2
tae04070	Phosphatidylinositol signaling system	2
tae04075	Plant hormone signal transduction	2
tae04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00900	Terpenoid backbone biosynthesis	3
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00071	Fatty acid degradation	2
hvu00410	beta-Alanine metabolism	2
hvu01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	3
sbi00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	3
sbi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01230	Biosynthesis of amino acids	6
bdi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
bdi00260	Glycine, serine and threonine metabolism	3
bdi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	3
bdi04144	Endocytosis	2
bdi00190	Oxidative phosphorylation	2
bdi04145	Phagosome	2
bdi04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	9
cre03060	Protein export	2

Expression

Expression pattern

Entrez Gene ID^*

107783801

107782035

101251489

101258215

102594823

102586665

835123

835135

100786727

100803472

103827587

103841155

100251351

100242169

7482885

7475526

25492998

25484857

121219417

107922614

106402892

106367842

102609923

102629777

4342601

9270427

123168031

123086118

123410751

110431251

8075043

100823297

100839035

5728946

The preparation time of this page was 0.1 [sec].


Species	nta	sly	ath	gma	vvi	ppo	mtr	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	cre	tae
Paralog	1	2	3	3	2	3	2	3	1	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107799997 (nta-r.1 coexpression data)

Top 50 enrichment test to 107799997 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**