ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107804149	transcriptional activator TAF-1-like
nta-r.1	107824425	transcriptional activator TAF-1-like
nta-r.1	107819448	transcriptional activator TAF-1
nta-r.1	107806524	transcriptional activator TAF-1-like
sly-u.5	101252588	transcriptional activator TAF-1-like
sly-u.5	101249493	transcriptional activator TAF-1
sot-r.1	102597029	transcriptional activator TAF-1-like
sot-r.1	102579619	transcriptional activator TAF-1-like
ath-u.5	GBF2	G-box binding factor 2
ath-u.5	GBF3	G-box binding factor 3
gma-u.5	BZIP64	bZIP transcription factor bZIP64
gma-u.5	100781875	common plant regulatory factor 1
gma-u.5	BZIP77	bZIP transcription factor bZIP77
bra-r.6	103866484	G-box-binding factor 3
bra-r.6	103836873	G-box-binding factor 2
vvi-u.5	100248302	common plant regulatory factor 1
vvi-u.5	100257104	common plant regulatory factor 1
ppo-u.5	7494132	common plant regulatory factor 1
ppo-u.5	7457378	common plant regulatory factor 1
mtr-u.5	11431340	common plant regulatory factor 1
mtr-u.5	25500771	common plant regulatory factor 1
ghi-r.1	107948195	G-box-binding factor 3
ghi-r.1	107945871	G-box-binding factor 3
ghi-r.1	107924495	G-box-binding factor 3
bna-r.1	106390279	G-box-binding factor 3-like
bna-r.1	125593227	G-box-binding factor 2-like
bna-r.1	106450714	G-box-binding factor 3
cit-r.1	102607505	common plant regulatory factor 1
cit-r.1	127901141	common plant regulatory factor 1-like
osa-u.5	4327165	common plant regulatory factor 1
osa-u.5	4339653	common plant regulatory factor 1
zma-u.5	542309	G-box binding factor 1
zma-u.5	542188	bZIP transcription factor 1
tae-r.2	123069043	common plant regulatory factor 1
tae-r.2	123147277	G-box-binding factor 3
tae-r.2	123183194	common plant regulatory factor 1
hvu-r.1	123451045	common plant regulatory factor 1-like
sbi-r.1	8064695	common plant regulatory factor 1
sbi-r.1	110433340	G-box-binding factor 3-like
bdi-r.1	100841034	G-box-binding factor 3
bdi-r.1	100835529	common plant regulatory factor 1

Top 50 coexpressed genes to 107804149 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107804149 (nta-r.1 coexpression data)

CoexMap"107804149"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(2987 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(4980 genes)

IEA

GO MF

GO:0043565 [list] [network] sequence-specific DNA binding	(1306 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(2091 genes)	IEA

Protein

XP_016483464.1 [sequence] [blastp]
XP_016483465.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_016483464.1)
nucl 10	(predict for XP_016483465.1)

Subcellular
localization
TargetP

other 8, chlo 3	(predict for XP_016483464.1)
other 8, chlo 3	(predict for XP_016483465.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107804149	nta-r.1 for 107824425	nta-r.1 for 107819448	nta-r.1 for 107806524	sly-u.5 for 101252588	sly-u.5 for 101249493	sot-r.1 for 102597029	sot-r.1 for 102579619	ath-u.5 for GBF2	ath-u.5 for GBF3	gma-u.5 for BZIP64	gma-u.5 for 100781875	gma-u.5 for BZIP77	bra-r.6 for 103866484	bra-r.6 for 103836873	vvi-u.5 for 100248302	vvi-u.5 for 100257104	ppo-u.5 for 7494132	ppo-u.5 for 7457378	mtr-u.5 for 11431340	mtr-u.5 for 25500771	ghi-r.1 for 107948195	ghi-r.1 for 107945871	ghi-r.1 for 107924495	bna-r.1 for 106390279	bna-r.1 for 125593227	bna-r.1 for 106450714	cit-r.1 for 102607505	cit-r.1 for 127901141	osa-u.5 for 4327165	osa-u.5 for 4339653	zma-u.5 for 542309	zma-u.5 for 542188	tae-r.2 for 123069043	tae-r.2 for 123147277	tae-r.2 for 123183194	hvu-r.1 for 123451045	sbi-r.1 for 8064695	sbi-r.1 for 110433340	bdi-r.1 for 100841034	bdi-r.1 for 100835529

Ortholog

Ortholog ID: 3675

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

GBF2

GBF3

BZIP64

BZIP77

Function^*

transcriptional activator TAF-1-like

transcriptional activator TAF-1

transcriptional activator TAF-1-like

transcriptional activator TAF-1

transcriptional activator TAF-1-like

G-box binding factor 2

G-box binding factor 3

bZIP transcription factor bZIP64