ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107805784	cell division cycle protein 48 homolog
nta-r.1	107790858	cell division cycle protein 48 homolog
nta-r.1	107769727	calmodulin-interacting protein 111
sly-u.5	101245092	cell division control protein 48 homolog C
sly-u.5	101246391	cell division cycle protein 48 homolog
sly-u.5	101259229	cell division cycle protein 48 homolog
sot-r.1	102588443	cell division control protein 48 homolog C-like
sot-r.1	102600837	cell division cycle protein 48 homolog
sot-r.1	102584989	cell division cycle protein 48 homolog
ath-u.5	CIP111	Cam interacting protein 111
ath-u.5	CDC48	cell division cycle 48
gma-u.5	100799580	cell division cycle protein 48 homolog
gma-u.5	100800513	cell division control protein 48 homolog C
gma-u.5	CDC48	plamsma membrane-associated AAA-ATPase
bra-r.6	103847873	cell division control protein 48 homolog A
bra-r.6	103859279	cell division control protein 48 homolog A
vvi-u.5	100265402	cell division cycle protein 48 homolog
vvi-u.5	100258668	cell division cycle protein 48 homolog
vvi-u.5	100261441	cell division control protein 48 homolog C
ppo-u.5	18100167	cell division cycle protein 48 homolog
ppo-u.5	7479654	calmodulin-interacting protein 111
mtr-u.5	11422689	calmodulin-interacting protein 111
mtr-u.5	11432951	cell division control protein 48 homolog D
mtr-u.5	25483983	cell division control protein 48 homolog E
ghi-r.1	107944187	cell division cycle protein 48 homolog
ghi-r.1	107933568	calmodulin-interacting protein 111
ghi-r.1	107931226	cell division cycle protein 48 homolog
bna-r.1	106382582	cell division control protein 48 homolog D
bna-r.1	106387534	cell division control protein 48 homolog C
bna-r.1	106388676	cell division control protein 48 homolog C-like
cit-r.1	102612408	cell division cycle protein 48 homolog
cit-r.1	102611590	cell division cycle protein 48 homolog
osa-u.5	4331645	cell division cycle protein 48 homolog
osa-u.5	4339880	cell division control protein 48 homolog C
zma-u.5	100279266	uncharacterized LOC100279266
zma-u.5	100278319	uncharacterized LOC100278319
zma-u.5	100279295	Cell division control protein 48 homolog C
tae-r.2	123072171	cell division control protein 48 homolog C
tae-r.2	123049926	cell division control protein 48 homolog E-like
tae-r.2	123053108	cell division control protein 48 homolog E
hvu-r.1	123399786	cell division control protein 48 homolog E-like
hvu-r.1	123399795	cell division control protein 48 homolog E-like
sbi-r.1	8067906	cell division control protein 48 homolog C
sbi-r.1	8073902	cell division control protein 48 homolog E
bdi-r.1	100821246	cell division control protein 48 homolog E
bdi-r.1	100843494	cell division control protein 48 homolog C
cre-r.1	CHLRE_09g401182v5	uncharacterized protein
cre-r.1	CHLRE_06g269950v5	uncharacterized protein
cre-r.1	CHLRE_09g398550v5	uncharacterized protein

Top 50 coexpressed genes to 107805784 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107805784 (nta-r.1 coexpression data)

CoexMap"107805784"

[Cytoscape]

Annotation

functional annotation

KEGG

nta04141 [list] [network] Protein processing in endoplasmic reticulum (495 genes)

GO BP

GO:0051228 [list] [network] mitotic spindle disassembly	(12 genes)	IEA
GO:0030970 [list] [network] retrograde protein transport, ER to cytosol	(14 genes)	IEA
GO:0097352 [list] [network] autophagosome maturation	(14 genes)	IEA

GO CC

GO:0034098 [list] [network] VCP-NPL4-UFD1 AAA ATPase complex	(18 genes)	IEA
GO:0005829 [list] [network] cytosol	(1509 genes)	IEA
GO:0005634 [list] [network] nucleus	(4980 genes)	IEA

GO MF

GO:0031593 [list] [network] polyubiquitin modification-dependent protein binding	(55 genes)	IEA
GO:0016887 [list] [network] ATP hydrolysis activity	(824 genes)	IEA
GO:0005524 [list] [network] ATP binding	(3859 genes)	IEA

Protein

XP_016485355.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, nucl 2, mito 1, cysk 1

(predict for XP_016485355.2)

Subcellular
localization
TargetP

other 7, chlo 5

(predict for XP_016485355.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107805784	nta-r.1 for 107790858	nta-r.1 for 107769727	sly-u.5 for 101245092	sly-u.5 for 101246391	sly-u.5 for 101259229	sot-r.1 for 102588443	sot-r.1 for 102600837	sot-r.1 for 102584989	ath-u.5 for CIP111	ath-u.5 for CDC48	gma-u.5 for 100799580	gma-u.5 for 100800513	gma-u.5 for CDC48	bra-r.6 for 103847873	bra-r.6 for 103859279	vvi-u.5 for 100265402	vvi-u.5 for 100258668	vvi-u.5 for 100261441	ppo-u.5 for 18100167	ppo-u.5 for 7479654	mtr-u.5 for 11422689	mtr-u.5 for 11432951	mtr-u.5 for 25483983	ghi-r.1 for 107944187	ghi-r.1 for 107933568	ghi-r.1 for 107931226	bna-r.1 for 106382582	bna-r.1 for 106387534	bna-r.1 for 106388676	cit-r.1 for 102612408	cit-r.1 for 102611590	osa-u.5 for 4331645	osa-u.5 for 4339880	zma-u.5 for 100279266	zma-u.5 for 100278319	zma-u.5 for 100279295	tae-r.2 for 123072171	tae-r.2 for 123049926	tae-r.2 for 123053108	hvu-r.1 for 123399786	hvu-r.1 for 123399795	sbi-r.1 for 8067906	sbi-r.1 for 8073902	bdi-r.1 for 100821246	bdi-r.1 for 100843494	cre-r.1 for CHLRE_09g401182v5	cre-r.1 for CHLRE_06g269950v5	cre-r.1 for CHLRE_09g398550v5

Ortholog

Ortholog ID: 216

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

sbi

bdi

cre

Symbol

CIP111

CDC48C

CDC48

Function^*