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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107886515   pentatricopeptide repeat-containing protein At3g04130, mitochondrial 
 ath-u.5   AT3G04130   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100819027   pentatricopeptide repeat-containing protein At3g04130, mitochondrial 
 vvi-u.5   100264769   pentatricopeptide repeat-containing protein At3g04130, mitochondrial 
 ppo-u.5   7460037   pentatricopeptide repeat-containing protein At3g04130, mitochondrial 
 mtr-u.5   25497864   pentatricopeptide repeat-containing protein At3g04130, mitochondrial 
 mtr-u.5   11424420   pentatricopeptide repeat-containing protein At3g04130, mitochondrial 
 osa-u.5   4329895   pentatricopeptide repeat-containing protein At3g04130, mitochondrial 
 zma-u.5   103627382   pentatricopeptide repeat-containing protein, mitochondrial-like 

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Top 50 coexpressed genes to 107886515 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107886515 (ghi-r.1 coexpression data)

CoexMap"107886515"


ghiLOC107886515 | Entrez gene ID : 107886515    
Species ghi ath gma vvi ppo mtr osa zma hvu bna sly cit bra sbi bdi nta tae cre sot
Paralog 1 1 1 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (890 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016665992.1 [sequence] [blastp]
XP_040954506.1 [sequence] [blastp]
XP_040954515.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 4,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for XP_016665992.1)
cyto 4,  chlo 4,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for XP_040954506.1)
cyto 4,  chlo 4,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for XP_040954515.1)
Subcellular
localization
TargetP
scret 7  (predict for XP_016665992.1)
scret 7  (predict for XP_040954506.1)
scret 7  (predict for XP_040954515.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107886515
ath-u.5
for
AT3G04130
gma-u.5
for
100819027
vvi-u.5
for
100264769
ppo-u.5
for
7460037
mtr-u.5
for
25497864
mtr-u.5
for
11424420
osa-u.5
for
4329895
zma-u.5
for
103627382


Ortholog ID: 11281
Species ghi ghi ath bra cit gma vvi ppo mtr mtr sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC107886515 LOC107909815 AT3G04130 LOC103848937 LOC102616033 LOC100819027 LOC100264769 LOC7460037 LOC25497864 LOC11424420 LOC102589169 LOC107828121 LOC107817425 LOC4329895 LOC103627382 LOC123144729 LOC123127625 LOC123401433 LOC8070616 LOC104584282
Function* pentatricopeptide repeat-containing protein At3g04130, mitochondrial pentatricopeptide repeat-containing protein At3g04130, mitochondrial Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g04130, mitochondrial pentatricopeptide repeat-containing protein At3g04130, mitochondrial pentatricopeptide repeat-containing protein At3g04130, mitochondrial pentatricopeptide repeat-containing protein At3g04130, mitochondrial pentatricopeptide repeat-containing protein At3g04130, mitochondrial pentatricopeptide repeat-containing protein At3g04130, mitochondrial pentatricopeptide repeat-containing protein At3g04130, mitochondrial pentatricopeptide repeat-containing protein At3g04130, mitochondrial pentatricopeptide repeat-containing protein At3g04130, mitochondrial pentatricopeptide repeat-containing protein At3g04130, mitochondrial pentatricopeptide repeat-containing protein At3g04130, mitochondrial pentatricopeptide repeat-containing protein, mitochondrial-like pentatricopeptide repeat-containing protein At3g04130, mitochondrial pentatricopeptide repeat-containing protein At3g04130, mitochondrial pentatricopeptide repeat-containing protein At3g04130, mitochondrial pentatricopeptide repeat-containing protein At3g04130, mitochondrial pentatricopeptide repeat-containing protein At3g04130, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 3
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 4
mtr00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 3
mtr00770 Pantothenate and CoA biosynthesis 2
mtr00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 3
nta04626 Plant-pathogen interaction 3
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta03015 mRNA surveillance pathway 3
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107886515 107909815 819568 103848937 102616033 100819027 100264769 7460037 25497864 11424420 102589169 107828121 107817425 4329895 103627382 123144729 123127625 123401433 8070616 104584282
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