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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107888690   probable RNA helicase SDE3 
 ath-u.5   SDE3   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 gma-u.5   100801796   probable RNA helicase SDE3 
 vvi-u.5   100247679   probable RNA helicase SDE3 
 ppo-u.5   18101568   probable RNA helicase SDE3 
 ppo-u.5   18098912   probable RNA helicase SDE3 
 mtr-u.5   11441457   probable RNA helicase SDE3 
 mtr-u.5   11416205   probable RNA helicase SDE3 
 sly-u.5   101258662   probable RNA helicase SDE3 
 sly-u.5   101251686   probable RNA helicase SDE3 
 osa-u.5   4331698   probable RNA helicase SDE3 
 zma-u.5   100382450   putative RNA helicase family protein 
 zma-u.5   103631746   probable RNA helicase SDE3 

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Top 50 coexpressed genes to 107888690 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107888690 (ghi-r.1 coexpression data)

CoexMap"107888690"


ghiLOC107888690 | Entrez gene ID : 107888690    
Species ghi ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna
Paralog 1 1 1 1 2 2 2 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0035194 [list] [network] regulatory ncRNA-mediated post-transcriptional gene silencing  (33 genes)  IEA  
GO CC
GO:0043186 [list] [network] P granule  (10 genes)  IEA  
GO:0005829 [list] [network] cytosol  (2580 genes)  IEA  
GO MF
GO:0032574 [list] [network] 5'-3' RNA helicase activity  (4 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
Protein XP_016668355.2 [sequence] [blastp]
XP_016668362.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  chlo 1,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_016668355.2)
nucl 7,  cyto 1,  chlo 1,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_016668362.2)
Subcellular
localization
TargetP
other 9  (predict for XP_016668355.2)
other 9  (predict for XP_016668362.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107888690

.
ath-u.5
for
SDE3

.
gma-u.5
for
100801796

.
vvi-u.5
for
100247679

.
ppo-u.5
for
18101568

.
ppo-u.5
for
18098912

.
mtr-u.5
for
11441457

.
mtr-u.5
for
11416205

.
sly-u.5
for
101258662

.
sly-u.5
for
101251686

.
osa-u.5
for
4331698

.
zma-u.5
for
100382450

.
zma-u.5
for
103631746

.


Ortholog ID: 7397
Species ath gma sly sly osa zma zma bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol SDE3 LOC100801796 LOC101251686 LOC101258662 LOC4331698 LOC103631746 LOC100382450 LOC103844125 LOC100247679 LOC18101568 LOC18098912 LOC11441457 LOC11416205 LOC123084864 LOC123098491 LOC123449501 LOC107928604 LOC107888690 LOC106371189 LOC111197903 CHLRE_12g542450v5 LOC8082158 LOC102582644 LOC102615655 LOC102619574 LOC100840158 LOC107821118 LOC107787108
Function* P-loop containing nucleoside triphosphate hydrolases superfamily protein probable RNA helicase SDE3 probable RNA helicase SDE3 probable RNA helicase SDE3 probable RNA helicase SDE3 probable RNA helicase SDE3 putative RNA helicase family protein probable RNA helicase SDE3 probable RNA helicase SDE3 probable RNA helicase SDE3 probable RNA helicase SDE3 probable RNA helicase SDE3 probable RNA helicase SDE3 probable RNA helicase SDE3 probable RNA helicase SDE3 probable RNA helicase SDE3 probable RNA helicase SDE3 probable RNA helicase SDE3 probable RNA helicase SDE3 probable RNA helicase SDE3 uncharacterized protein probable RNA helicase SDE3 probable RNA helicase SDE3 probable RNA helicase SDE3 probable RNA helicase SDE3 probable RNA helicase SDE3 putative RNA helicase SDE3 putative RNA helicase SDE3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 3
gma00670 One carbon pool by folate 3
gma00240 Pyrimidine metabolism 2
gma00790 Folate biosynthesis 2
gma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00010 Glycolysis / Gluconeogenesis 2
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00520 Amino sugar and nucleotide sugar metabolism 3
mtr00290 Valine, leucine and isoleucine biosynthesis 2
mtr00650 Butanoate metabolism 2
mtr00660 C5-Branched dibasic acid metabolism 2
mtr00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00520 Amino sugar and nucleotide sugar metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 4
hvu03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00040 Pentose and glucuronate interconversions 4
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 3
sbi03040 Spliceosome 3
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04814 Motor proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 2
bdi00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00590 Arachidonic acid metabolism 2
nta00790 Folate biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837047 100801796 101251686 101258662 4331698 103631746 100382450 103844125 100247679 18101568 18098912 11441457 11416205 123084864 123098491 123449501 107928604 107888690 106371189 111197903 66055727 8082158 102582644 102615655 102619574 100840158 107821118 107787108
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