ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	107891850	probable polygalacturonase
ath-u.5	AT3G06770	Pectin lyase-like superfamily protein
ath-u.5	AT3G16850	Pectin lyase-like superfamily protein
ath-u.5	AT5G49215	Pectin lyase-like superfamily protein
gma-u.5	100797678	probable polygalacturonase
gma-u.5	100801823	probable polygalacturonase
vvi-u.5	109122642	probable polygalacturonase
vvi-u.5	100241496	probable polygalacturonase
vvi-u.5	100247060	probable polygalacturonase
ppo-u.5	7477215	probable polygalacturonase
ppo-u.5	18101890	probable polygalacturonase
mtr-u.5	11420255	probable polygalacturonase
mtr-u.5	25488046	probable polygalacturonase
sly-u.5	101268765	probable polygalacturonase
sly-u.5	101264974	probable polygalacturonase
osa-u.5	4352486	probable polygalacturonase
osa-u.5	4351055	probable polygalacturonase
zma-u.5	100191454	uncharacterized LOC100191454
zma-u.5	100282607	polygalacturonase

Annotation

functional annotation

KEGG

GO BP

GO:0005975 [list] [network] carbohydrate metabolic process

(1780 genes)

IEA

GO CC

GO MF

GO:0004650 [list] [network] polygalacturonase activity

(164 genes)

IEA

Protein

XP_016672263.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 2, cyto 2, plas 1, vacu 1, chlo_mito 1, cyto_pero 1, cyto_E.R. 1

(predict for XP_016672263.2)

Subcellular
localization
TargetP

scret 4

(predict for XP_016672263.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107891850	ath-u.5 for AT3G06770	ath-u.5 for AT3G16850	ath-u.5 for AT5G49215	gma-u.5 for 100797678	gma-u.5 for 100801823	vvi-u.5 for 109122642	vvi-u.5 for 100241496	vvi-u.5 for 100247060	ppo-u.5 for 7477215	ppo-u.5 for 18101890	mtr-u.5 for 11420255	mtr-u.5 for 25488046	sly-u.5 for 101268765	sly-u.5 for 101264974	osa-u.5 for 4352486	osa-u.5 for 4351055	zma-u.5 for 100191454	zma-u.5 for 100282607

Ortholog

Ortholog ID: 2332

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

probable polygalacturonase

Pectin lyase-like superfamily protein

probable polygalacturonase

probable polygalacturonase-like

probable polygalacturonase

putative polygalacturonase

probable polygalacturonase

uncharacterized LOC100191454

polygalacturonase

probable polygalacturonase

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00520	Amino sugar and nucleotide sugar metabolism	2
ppo00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04145	Phagosome	4
sot04517	IgSF CAM signaling	4
sot04814	Motor proteins	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00760	Nicotinate and nicotinamide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00520	Amino sugar and nucleotide sugar metabolism	4
osa01250	Biosynthesis of nucleotide sugars	4
osa04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04145	Phagosome	2
zma04517	IgSF CAM signaling	2
zma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00511	Other glycan degradation	3
tae00513	Various types of N-glycan biosynthesis	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae00531	Glycosaminoglycan degradation	3
tae00600	Sphingolipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00511	Other glycan degradation	3
tae00513	Various types of N-glycan biosynthesis	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae00531	Glycosaminoglycan degradation	3
tae00600	Sphingolipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04626	Plant-pathogen interaction	2
sbi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

107888934

107940911

819862

834981

103869730

103875025

106403076

106439444

102624542

100801823

100777503

100247060

109122642

18101890

7477215

11420255

25488046

101268765

101264974

102580232

102598202

142179336

107764241

4351055

4352486

100191454

100282607

123096876

123091797

123395463

8070181

100846127

100822979

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107891850 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107891850 (ghi-r.1 coexpression data)


Species	ghi	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	sot	nta	cre	tae
Paralog	1	3	2	3	2	2	2	2	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107891850 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107891850 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**