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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107896590   flowering time control protein FCA 
 ghi-r.1   107916225   flowering time control protein FCA 
 ath-u.5   FCA   flowering time control protein FCA 
 bra-r.6   FCA   flowering time control protein FCA 
 bna-r.1   106367467   flowering time control protein FCA 
 bna-r.1   125575626   flowering time control protein FCA-like 
 cit-r.1   102613412   flowering time control protein FCA 
 gma-u.5   100786792   flowering time control protein FCA 
 gma-u.5   100798390   flowering time control protein FCA 
 vvi-u.5   FCA   flowering time control 
 ppo-u.5   18102616   flowering time control protein FCA 
 mtr-u.5   11418334   flowering time control protein FCA 
 sly-u.5   101267262   flowering time control protein FCA 
 sot-r.1   102581555   flowering time control protein FCA 
 nta-r.1   107792724   flowering time control protein FCA 
 nta-r.1   107794627   flowering time control protein FCA 
 osa-u.5   4346429   flowering time control protein FCA 
 zma-u.5   100383162   RNA binding 
 tae-r.2   123111501   flowering time control protein FCA 
 tae-r.2   123120723   flowering time control protein FCA 
 tae-r.2   543096   flowering time control protein FCA 
 hvu-r.1   123399188   flowering time control protein FCA-like 
 sbi-r.1   110432370   flowering time control protein FCA 
 bdi-r.1   100836687   flowering time control protein FCA 

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Top 50 coexpressed genes to 107896590 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107896590 (ghi-r.1 coexpression data)

CoexMap"107896590"


ghiLOC107896590 | Entrez gene ID : 107896590    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016677276.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_016677276.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016677276.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107896590
ghi-r.1
for
107916225
ath-u.5
for
FCA
bra-r.6
for
FCA
bna-r.1
for
106367467
bna-r.1
for
125575626
cit-r.1
for
102613412
gma-u.5
for
100786792
gma-u.5
for
100798390
vvi-u.5
for
FCA
ppo-u.5
for
18102616
mtr-u.5
for
11418334
sly-u.5
for
101267262
sot-r.1
for
102581555
nta-r.1
for
107792724
nta-r.1
for
107794627
osa-u.5
for
4346429
zma-u.5
for
100383162
tae-r.2
for
123111501
tae-r.2
for
123120723
tae-r.2
for
543096
hvu-r.1
for
123399188
sbi-r.1
for
110432370
bdi-r.1
for
100836687


Ortholog ID: 10857
Species ghi ghi ath bra bna bna cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC107896590 LOC107916225 FCA FCA LOC106367467 LOC125575626 LOC102613412 LOC100786792 LOC100798390 FCA LOC18102616 LOC11418334 LOC101267262 LOC102581555 LOC107792724 LOC107794627 LOC4346429 LOC100383162 LOC123111501 LOC123120723 LOC543096 LOC123399188 LOC110432370 LOC100836687
Function* flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA-like flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA RNA binding flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA flowering time control protein FCA-like flowering time control protein FCA flowering time control protein FCA
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 6
ghi03013 Nucleocytoplasmic transport 4
ghi03040 Spliceosome 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 4
ppo03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
sot03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03015 mRNA surveillance pathway 5
nta03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 5
tae00860 Porphyrin metabolism 3
tae00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107896590 107916225 827323 103869778 106367467 125575626 102613412 100786792 100798390 100255122 18102616 11418334 101267262 102581555 107792724 107794627 4346429 100383162 123111501 123120723 543096 123399188 110432370 100836687
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