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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107898785   E3 ubiquitin-protein ligase RING1 
 ath-u.5   AT4G33565   RING/U-box superfamily protein 
 ath-u.5   RING1   RING/U-box superfamily protein 
 ath-u.5   AT1G72220   RING/U-box superfamily protein 
 gma-u.5   100813311   RING-H2 finger protein ATL54 
 gma-u.5   100781245   RING-H2 finger protein ATL54 
 vvi-u.5   100854240   RING-H2 finger protein ATL54 
 vvi-u.5   100257251   RING-H2 finger protein ATL54 
 vvi-u.5   100854068   RING-H2 finger protein ATL54 
 ppo-u.5   7461256   E3 ubiquitin-protein ligase RING1 
 ppo-u.5   7466783   E3 ubiquitin-protein ligase RING1 
 ppo-u.5   7486081   RING-H2 finger protein ATL54 
 mtr-u.5   11433251   RING-H2 finger protein ATL54 
 mtr-u.5   25501862   E3 ubiquitin-protein ligase RING1 
 mtr-u.5   11411830   RING-H2 finger protein ATL54 
 sly-u.5   104646781   RING-H2 finger protein ATL54-like 
 sly-u.5   101247705   RING-H2 finger protein ATL54 
 sly-u.5   101264281   RING-H2 finger protein ATL52 
 osa-u.5   4335997   RING-H2 finger protein ATL51 
 osa-u.5   9267130   E3 ubiquitin-protein ligase Os04g0590900-like 
 zma-u.5   103653664   RING-H2 finger protein ATL5 
 zma-u.5   100272434   putative RING zinc finger domain superfamily protein 

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Top 50 coexpressed genes to 107898785 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107898785 (ghi-r.1 coexpression data)

CoexMap"107898785"


ghiLOC107898785 | Entrez gene ID : 107898785    
Species ghi ath gma vvi ppo mtr sly osa zma hvu bna cit bra sbi bdi nta tae cre sot
Paralog 1 3 2 3 3 3 3 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016567 [list] [network] protein ubiquitination  (962 genes)  IEA  
GO CC
GO MF
GO:0016740 [list] [network] transferase activity  (8317 genes)  IEA  
Protein XP_016679813.1 [sequence] [blastp]
XP_016679814.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  E.R. 3,  mito 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_016679813.1)
chlo 4,  E.R. 3,  mito 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_016679814.1)
Subcellular
localization
TargetP
other 8,  mito 3  (predict for XP_016679813.1)
other 8,  mito 3  (predict for XP_016679814.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107898785
ath-u.5
for
AT4G33565
ath-u.5
for
RING1
ath-u.5
for
AT1G72220
gma-u.5
for
100813311
gma-u.5
for
100781245
vvi-u.5
for
100854240
vvi-u.5
for
100257251
vvi-u.5
for
100854068
ppo-u.5
for
7461256
ppo-u.5
for
7466783
ppo-u.5
for
7486081
mtr-u.5
for
11433251
mtr-u.5
for
25501862
mtr-u.5
for
11411830
sly-u.5
for
104646781
sly-u.5
for
101247705
sly-u.5
for
101264281
osa-u.5
for
4335997
osa-u.5
for
9267130
zma-u.5
for
103653664
zma-u.5
for
100272434


Ortholog ID: 1245
Species ghi ghi ath ath bra bra bna cit cit gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma hvu hvu sbi sbi bdi
Symbol LOC107928616 LOC107905079 AT1G72220 AT4G33565 LOC103834472 LOC103847555 LOC106365027 LOC102627101 LOC102617929 LOC100801551 LOC100854068 LOC100854240 LOC7466783 LOC7486081 LOC11433251 LOC11434338 LOC101268519 LOC104646781 LOC102589761 LOC102597750 LOC107805445 LOC107812361 LOC4335997 LOC9267130 LOC103653664 LOC100272434 LOC123426868 LOC123411554 LOC8072614 LOC8073398 LOC100836409
Function* RING-H2 finger protein ATL54 RING-H2 finger protein ATL54 RING/U-box superfamily protein RING/U-box superfamily protein RING-H2 finger protein ATL54 E3 ubiquitin-protein ligase RING1 RING-H2 finger protein ATL54-like RING-H2 finger protein ATL52-like RING-H2 finger protein ATL54-like RING-H2 finger protein ATL54-like RING-H2 finger protein ATL54 RING-H2 finger protein ATL54 E3 ubiquitin-protein ligase RING1 RING-H2 finger protein ATL54 RING-H2 finger protein ATL54 RING-H2 finger protein ATL54 RING-H2 finger protein ATL54-like RING-H2 finger protein ATL54-like E3 ubiquitin-protein ligase RING1-like RING-H2 finger protein ATL54-like RING-H2 finger protein ATL54-like uncharacterized LOC107812361 RING-H2 finger protein ATL51 E3 ubiquitin-protein ligase Os04g0590900-like RING-H2 finger protein ATL5 putative RING zinc finger domain superfamily protein RING-H2 finger protein ATL52-like E3 ubiquitin-protein ligase RING1-like E3 ubiquitin-protein ligase RING1 RING-H2 finger protein ATL51 RING-H2 finger protein ATL52
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 2
ghi03272 Virion - Hepatitis viruses 2
ghi04144 Endocytosis 2
ghi00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00480 Glutathione metabolism 4
cit02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00940 Phenylpropanoid biosynthesis 6
vvi00941 Flavonoid biosynthesis 4
vvi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
vvi04016 MAPK signaling pathway - plant 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00940 Phenylpropanoid biosynthesis 4
sot00941 Flavonoid biosynthesis 3
sot00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
sot00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot02010 ABC transporters 2
sot00620 Pyruvate metabolism 2
sot00710 Carbon fixation by Calvin cycle 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107928616 107905079 843554 829496 103834472 103847555 106365027 102627101 102617929 100801551 100854068 100854240 7466783 7486081 11433251 11434338 101268519 104646781 102589761 102597750 107805445 107812361 4335997 9267130 103653664 100272434 123426868 123411554 8072614 8073398 100836409
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