Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107900108   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 ghi-r.1   107946850   pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like 
 ghi-r.1   107933481   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 ath-u.5   OTP70   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103863081   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 cit-r.1   112499593   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 gma-u.5   112997711   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 vvi-u.5   100241682   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 ppo-u.5   7476750   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 mtr-u.5   25489190   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 sly-u.5   101243676   pentatricopeptide repeat-containing protein 
 sot-r.1   107061653   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 nta-r.1   107817039   pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like 
 nta-r.1   107803788   pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like 
 osa-u.5   4334814   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 hvu-r.1   123395175   pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like 
 bdi-r.1   100824336   pentatricopeptide repeat-containing protein At4g25270, chloroplastic 

close


Top 50 coexpressed genes to 107900108 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 107900108 (ghi-r.1 coexpression data)

CoexMap"107900108"


ghiLOC107900108 | Entrez gene ID : 107900108    
Species ghi ath bra cit gma vvi ppo mtr sly sot nta osa hvu bdi tae zma sbi cre bna
Paralog 3 1 1 1 1 1 1 1 1 1 2 1 1 1 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (557 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (14879 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016681307.1 [sequence] [blastp]
XP_040937787.1 [sequence] [blastp]
XP_040937788.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  nucl 1,  cyto 1,  extr 1,  cyto_nucl 1,  mito 1,  plas 1,  vacu 1,  E.R. 1,  cysk_nucl 1,  E.R._vacu 1,  cyto_pero 1,  E.R._plas 1,  mito_plas 1  (predict for XP_016681307.1)
chlo 3,  nucl 1,  cyto 1,  extr 1,  cyto_nucl 1,  mito 1,  plas 1,  vacu 1,  E.R. 1,  cysk_nucl 1,  E.R._vacu 1,  cyto_pero 1,  E.R._plas 1,  mito_plas 1  (predict for XP_040937787.1)
chlo 3,  nucl 1,  cyto 1,  extr 1,  cyto_nucl 1,  mito 1,  plas 1,  vacu 1,  E.R. 1,  cysk_nucl 1,  E.R._vacu 1,  cyto_pero 1,  E.R._plas 1,  mito_plas 1  (predict for XP_040937788.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016681307.1)
other 8  (predict for XP_040937787.1)
other 8  (predict for XP_040937788.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107900108
ghi-r.1
for
107946850
ghi-r.1
for
107933481
ath-u.5
for
OTP70
bra-r.6
for
103863081
cit-r.1
for
112499593
gma-u.5
for
112997711
vvi-u.5
for
100241682
ppo-u.5
for
7476750
mtr-u.5
for
25489190
sly-u.5
for
101243676
sot-r.1
for
107061653
nta-r.1
for
107817039
nta-r.1
for
107803788
osa-u.5
for
4334814
hvu-r.1
for
123395175
bdi-r.1
for
100824336


Ortholog ID: 9609
Species ghi ghi ghi ath bra cit gma vvi ppo mtr sly sot nta nta osa bdi
Symbol LOC107900108 LOC107946850 LOC107933481 OTP70 LOC103863081 LOC112499593 LOC112997711 LOC100241682 LOC7476750 LOC25489190 LOC101243676 LOC107061653 LOC107817039 LOC107803788 LOC4334814 LOC100824336
Function* pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like pentatricopeptide repeat-containing protein At4g25270, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107900108 107946850 107933481 828630 103863081 112499593 112997711 100241682 7476750 25489190 101243676 107061653 107817039 107803788 4334814 100824336
The preparation time of this page was 0.1 [sec].