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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1  112499593  pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 ath-u.5  OTP70  Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5  112997711  pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 vvi-u.5  100241682  pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 ppo-u.5  7476750  pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 mtr-u.5  25489190  pentatricopeptide repeat-containing protein At4g25270, chloroplastic 
 sly-u.5  101243676  pentatricopeptide repeat-containing protein 
 osa-u.5  4334814  pentatricopeptide repeat-containing protein At4g25270, chloroplastic 

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Top 50 coexpressed genes to 112499593 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 112499593 (cit-r.1 coexpression data)

CoexMap"112499593"


citLOC112499593 | Entrez gene ID : 112499593
Species cit ath gma vvi ppo mtr sly osa bdi hvu bra bna sbi ghi sot nta cre tae zma
Paralog 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (369 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1117 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3939 genes)  IEA  
Protein XP_024958624.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_024958624.2)
Subcellular
localization
TargetP
chlo 9  (predict for XP_024958624.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

cit-r.1
for
112499593


ath-u.5
for
OTP70


gma-u.5
for
112997711


vvi-u.5
for
100241682


ppo-u.5
for
7476750


mtr-u.5
for
25489190


sly-u.5
for
101243676


osa-u.5
for
4334814



Ortholog ID: 9609
Species cit ath bra ghi ghi gma vvi ppo mtr sly sot nta nta osa bdi
Symbol LOC112499593 OTP70 LOC103863081 LOC107933481 LOC107946850 LOC112997711 LOC100241682 LOC7476750 LOC25489190 LOC101243676 LOC107061653 LOC107817039 LOC107803788 LOC4334814 LOC100824336
Function* pentatricopeptide repeat-containing protein At4g25270, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like pentatricopeptide repeat-containing protein At4g25270, chloroplastic-like pentatricopeptide repeat-containing protein At4g25270, chloroplastic pentatricopeptide repeat-containing protein At4g25270, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 2
ghi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 112499593 828630 103863081 107933481 107946850 112997711 100241682 7476750 25489190 101243676 107061653 107817039 107803788 4334814 100824336
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