ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	107904947	COP9 signalosome complex subunit 4
ghi-r.1	107887054	COP9 signalosome complex subunit 4
ghi-r.1	107910166	COP9 signalosome complex subunit 4
ghi-r.1	107921235	COP9 signalosome complex subunit 4
ath-u.5	COP8	Proteasome component (PCI) domain protein
bra-r.6	103848572	COP9 signalosome complex subunit 4
bra-r.6	103828002	COP9 signalosome complex subunit 4
bna-r.1	106431714	COP9 signalosome complex subunit 4
bna-r.1	106396389	COP9 signalosome complex subunit 4
bna-r.1	106349541	COP9 signalosome complex subunit 4
cit-r.1	102627923	COP9 signalosome complex subunit 4
gma-u.5	100793394	COP9 signalosome complex subunit 4
gma-u.5	100819593	COP9 signalosome complex subunit 4
vvi-u.5	100254062	COP9 signalosome complex subunit 4
ppo-u.5	18096581	COP9 signalosome complex subunit 4
ppo-u.5	7463397	COP9 signalosome complex subunit 4
mtr-u.5	25480548	COP9 signalosome complex subunit 4
sly-u.5	CSN4	COP9 signalosome complex subunit 4
sot-r.1	102583259	COP9 signalosome complex subunit 4
nta-r.1	107823129	COP9 signalosome complex subunit 4
nta-r.1	107790558	COP9 signalosome complex subunit 4
osa-u.5	4331948	COP9 signalosome complex subunit 4
zma-u.5	100192688	COP9 signalosome complex subunit 4
tae-r.2	123093120	COP9 signalosome complex subunit 4
tae-r.2	123098391	COP9 signalosome complex subunit 4
tae-r.2	542907	COP9 signalosome complex subunit 4
hvu-r.1	123449430	COP9 signalosome complex subunit 4
sbi-r.1	8054249	COP9 signalosome complex subunit 4
bdi-r.1	100834438	COP9 signalosome complex subunit 4
cre-r.1	CHLRE_11g478240v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0008180 [list] [network] COP9 signalosome	(38 genes)	IEA
GO:0005829 [list] [network] cytosol	(2580 genes)	IEA

GO MF

Protein

XP_016686980.1 [sequence] [blastp]
XP_040950380.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, cyto 4, nucl 1, extr 1, vacu 1, cysk_nucl 1, nucl_plas 1	(predict for XP_016686980.1)
chlo 4, cyto 4, nucl 1, extr 1, vacu 1, cysk_nucl 1, nucl_plas 1	(predict for XP_040950380.1)

Subcellular
localization
TargetP

other 8	(predict for XP_016686980.1)
other 8	(predict for XP_040950380.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107904947	ghi-r.1 for 107887054	ghi-r.1 for 107910166	ghi-r.1 for 107921235	ath-u.5 for COP8	bra-r.6 for 103848572	bra-r.6 for 103828002	bna-r.1 for 106431714	bna-r.1 for 106396389	bna-r.1 for 106349541	cit-r.1 for 102627923	gma-u.5 for 100793394	gma-u.5 for 100819593	vvi-u.5 for 100254062	ppo-u.5 for 18096581	ppo-u.5 for 7463397	mtr-u.5 for 25480548	sly-u.5 for CSN4	sot-r.1 for 102583259	nta-r.1 for 107823129	nta-r.1 for 107790558	osa-u.5 for 4331948	zma-u.5 for 100192688	tae-r.2 for 123093120	tae-r.2 for 123098391	tae-r.2 for 542907	hvu-r.1 for 123449430	sbi-r.1 for 8054249	bdi-r.1 for 100834438	cre-r.1 for CHLRE_11g478240v5

Ortholog

Ortholog ID: 6989

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

COP8

CSN4

Function^*

COP9 signalosome complex subunit 4

Proteasome component (PCI) domain protein

COP9 signalosome complex subunit 4

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00510	N-Glycan biosynthesis	6
ghi04141	Protein processing in endoplasmic reticulum	6
ghi04145	Phagosome	4
ghi03060	Protein export	2
ghi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2
ath03013	Nucleocytoplasmic transport	2
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	3
bra00970	Aminoacyl-tRNA biosynthesis	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03013	Nucleocytoplasmic transport	2
gma03420	Nucleotide excision repair	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	8
sly00010	Glycolysis / Gluconeogenesis	2
sly04141	Protein processing in endoplasmic reticulum	2
sly03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	5
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	10
nta03082	ATP-dependent chromatin remodeling	3
nta00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	11
nta00970	Aminoacyl-tRNA biosynthesis	2
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	5
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	4
zma03420	Nucleotide excision repair	3
zma03083	Polycomb repressive complex	2
zma03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	4
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	4
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	5
tae04141	Protein processing in endoplasmic reticulum	3
tae03013	Nucleocytoplasmic transport	3
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	3
sbi03083	Polycomb repressive complex	2
sbi03030	DNA replication	2
sbi03410	Base excision repair	2
sbi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	7

Expression

Expression pattern

Entrez Gene ID^*

107910166

107921235

107957569

834312

103848572

103828002

106431714

106396389

106349541

102627923

100793394

100819593

100254062

18096581

7463397

25480548

101255392

102583259

107823129

107790558

4331948

100192688

123093120

123098391

542907

123449430

8054249

100834438

5722889

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107904947 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107904947 (ghi-r.1 coexpression data)


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	1	2	3	1	2	1	2	1	1	1	2	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107904947 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107904947 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**