ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107920080	5'-3' exoribonuclease 4
ghi-r.1	107943427	5'-3' exoribonuclease 3
ghi-r.1	107958235	5'-3' exoribonuclease 3
ghi-r.1	107957582	5'-3' exoribonuclease 3
ath-u.5	XRN2	exoribonuclease 2
ath-u.5	XRN4	exoribonuclease 4
ath-u.5	XRN3	5'-3' exoribonuclease 3
bra-r.6	103832011	5'-3' exoribonuclease 3
bra-r.6	103852968	5'-3' exoribonuclease 3
bra-r.6	103828020	5'-3' exoribonuclease 2
bna-r.1	106390968	5'-3' exoribonuclease 3
bna-r.1	106397301	5'-3' exoribonuclease 3-like
bna-r.1	111215767	5'-3' exoribonuclease 4
cit-r.1	102610368	5'-3' exoribonuclease 4
cit-r.1	102623051	5'-3' exoribonuclease 3
gma-u.5	100783068	5'-3' exoribonuclease 3
gma-u.5	100785683	5'-3' exoribonuclease 3
vvi-u.5	100260845	5'-3' exoribonuclease 3
vvi-u.5	100253751	5'-3' exoribonuclease 4
ppo-u.5	7493956	5'-3' exoribonuclease 3
ppo-u.5	18110978	5'-3' exoribonuclease 4
ppo-u.5	18098928	5'-3' exoribonuclease 4
mtr-u.5	112421269	5'-3' exoribonuclease 4
mtr-u.5	112421174	5'-3' exoribonuclease 3
mtr-u.5	112418725	5'-3' exoribonuclease 3
sly-u.5	101248085	5'-3' exoribonuclease 3-like
sly-u.5	XRN4	protein ETHYLENE-INSENSITIVE5
sly-u.5	101258556	5'-3' exoribonuclease 3
sot-r.1	102589619	5'-3' exoribonuclease 3-like
sot-r.1	102604337	5'-3' exoribonuclease 4
sot-r.1	102592073	5'-3' exoribonuclease 3
nta-r.1	107817672	5'-3' exoribonuclease 3
nta-r.1	107828154	5'-3' exoribonuclease 4-like
nta-r.1	107830742	5'-3' exoribonuclease 3
osa-u.5	4334408	5'-3' exoribonuclease 4
osa-u.5	4329368	5'-3' exoribonuclease 2
osa-u.5	4324952	5'-3' exoribonuclease 3
zma-u.5	103649964	5'-3' exoribonuclease 3
zma-u.5	100501093	uncharacterized LOC100501093
zma-u.5	103641862	5'-3' exoribonuclease 4
tae-r.2	123079919	5'-3' exoribonuclease 3
tae-r.2	123071578	5'-3' exoribonuclease 3
tae-r.2	123062754	5'-3' exoribonuclease 3
hvu-r.1	123444770	5'-3' exoribonuclease 3-like
hvu-r.1	123400127	5'-3' exoribonuclease 3-like
hvu-r.1	123452664	5'-3' exoribonuclease 4-like
sbi-r.1	8085812	5'-3' exoribonuclease 3
sbi-r.1	8071116	5'-3' exoribonuclease 3
sbi-r.1	8058573	5'-3' exoribonuclease 2
bdi-r.1	100823403	5'-3' exoribonuclease 4-like
bdi-r.1	100835512	5'-3' exoribonuclease 3
cre-r.1	CHLRE_16g679900v5	uncharacterized protein
cre-r.1	CHLRE_06g280050v5	uncharacterized protein

Top 50 coexpressed genes to 107920080 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107920080 (ghi-r.1 coexpression data)

CoexMap"107920080"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi04016 [list] [network] MAPK signaling pathway - plant (428 genes)

GO BP

GO:0006139 [list] [network] nucleobase-containing compound metabolic process

(4366 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(7681 genes)

IEA

GO MF

GO:0004534 [list] [network] 5'-3' RNA exonuclease activity	(12 genes)	IEA
GO:0008270 [list] [network] zinc ion binding	(1753 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(9083 genes)	IEA

Protein

XP_040965666.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 10

(predict for XP_040965666.1)

Subcellular
localization
TargetP

other 7, mito 4

(predict for XP_040965666.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107920080	ghi-r.1 for 107943427	ghi-r.1 for 107958235	ghi-r.1 for 107957582	ath-u.5 for XRN2	ath-u.5 for XRN4	ath-u.5 for XRN3	bra-r.6 for 103832011	bra-r.6 for 103852968	bra-r.6 for 103828020	bna-r.1 for 106390968	bna-r.1 for 106397301	bna-r.1 for 111215767	cit-r.1 for 102610368	cit-r.1 for 102623051	gma-u.5 for 100783068	gma-u.5 for 100785683	vvi-u.5 for 100260845	vvi-u.5 for 100253751	ppo-u.5 for 7493956	ppo-u.5 for 18110978	ppo-u.5 for 18098928	mtr-u.5 for 112421269	mtr-u.5 for 112421174	mtr-u.5 for 112418725	sly-u.5 for 101248085	sly-u.5 for XRN4	sly-u.5 for 101258556	sot-r.1 for 102589619	sot-r.1 for 102604337	sot-r.1 for 102592073	nta-r.1 for 107817672	nta-r.1 for 107828154	nta-r.1 for 107830742	osa-u.5 for 4334408	osa-u.5 for 4329368	osa-u.5 for 4324952	zma-u.5 for 103649964	zma-u.5 for 100501093	zma-u.5 for 103641862	tae-r.2 for 123079919	tae-r.2 for 123071578	tae-r.2 for 123062754	hvu-r.1 for 123444770	hvu-r.1 for 123400127	hvu-r.1 for 123452664	sbi-r.1 for 8085812	sbi-r.1 for 8071116	sbi-r.1 for 8058573	bdi-r.1 for 100823403	bdi-r.1 for 100835512	cre-r.1 for CHLRE_16g679900v5	cre-r.1 for CHLRE_06g280050v5

Ortholog

Ortholog ID: 1091

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC107943427

LOC107957582

LOC107901512

XRN2

XRN4

XRN3

XRN4

Function^*

5'-3' exoribonuclease 3

5'-3' exoribonuclease 4

exoribonuclease 2

exoribonuclease 4

5'-3' exoribonuclease 3

5'-3' exoribonuclease 2

5'-3' exoribonuclease 4

5'-3' exoribonuclease 3-like

5'-3' exoribonuclease 4

5'-3' exoribonuclease 3

5'-3' exoribonuclease 4

5'-3' exoribonuclease 3

5'-3' exoribonuclease 4

5'-3' exoribonuclease 3

5'-3' exoribonuclease 4

5'-3' exoribonuclease 3

5'-3' exoribonuclease 4

5'-3' exoribonuclease 3-like

protein ETHYLENE-INSENSITIVE5

5'-3' exoribonuclease 3

5'-3' exoribonuclease 3-like

5'-3' exoribonuclease 4

5'-3' exoribonuclease 3

5'-3' exoribonuclease 4

5'-3' exoribonuclease 4-like

5'-3' exoribonuclease 4

5'-3' exoribonuclease 2

5'-3' exoribonuclease 3

uncharacterized LOC100501093

5'-3' exoribonuclease 4

5'-3' exoribonuclease 3

5'-3' exoribonuclease 3-like

5'-3' exoribonuclease 4-like

5'-3' exoribonuclease 3

5'-3' exoribonuclease 4

5'-3' exoribonuclease 4-like

5'-3' exoribonuclease 3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03018	RNA degradation	2
ghi03040	Spliceosome	2
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03018	RNA degradation	2
ghi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
ghi01230	Biosynthesis of amino acids	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2
ghi03040	Spliceosome	2
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	2
ath04141	Protein processing in endoplasmic reticulum	2
ath03013	Nucleocytoplasmic transport	2
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	2
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03450	Non-homologous end-joining	3
bna04016	MAPK signaling pathway - plant	2
bna03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00600	Sphingolipid metabolism	2
cit04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2
vvi03440	Homologous recombination	2
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	3
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00520	Amino sugar and nucleotide sugar metabolism	3
nta04016	MAPK signaling pathway - plant	2
nta00010	Glycolysis / Gluconeogenesis	2
nta00030	Pentose phosphate pathway	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4
nta03030	DNA replication	2
nta03410	Base excision repair	2
nta03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	2
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta03040	Spliceosome	2
nta04120	Ubiquitin mediated proteolysis	2
nta03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2
osa04016	MAPK signaling pathway - plant	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	4
osa04075	Plant hormone signal transduction	2
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	6
tae03013	Nucleocytoplasmic transport	5
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	3
hvu04712	Circadian rhythm - plant	2
hvu03018	RNA degradation	2
hvu04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03250	Viral life cycle - HIV-1	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	3
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04136	Autophagy - other	4

Expression

Expression pattern

Entrez Gene ID^*

107943427

107957582

107901512

834261

841891

843900

103852968

103828020

103838732

106397301

111215767

106421638

102610368

102623051

100785683

100793385

100253751

100263222

7493956

18110978

18104156

112421269

112421174

11429796

101248085

100147714

101258556

102589619

102604337

102592073

107808663

107785646

107780231

4334408

4329368

4324952

100501093

103641862

100384297

123071578

123444770

123400127

123452664

8085812

8071116

8083058

100823403

100835512

66056704

5720902

The preparation time of this page was 3.2 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	2	2	2	3	3	3	3	3	3	3	3	3	3	2	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107920080 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107920080 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**