ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107920667	zinc finger CCHC domain-containing protein 7
ghi-r.1	107899200	cold shock protein 1
ghi-r.1	107894978	zinc finger CCHC domain-containing protein 7
ghi-r.1	107894219	cellular nucleic acid-binding protein homolog
ath-u.5	AT3G43590	zinc knuckle (CCHC-type) family protein
bra-r.6	103848033	protein AIR1
bra-r.6	103842474	uncharacterized LOC103842474
bna-r.1	106406397	zinc finger CCHC domain-containing protein 7
bna-r.1	106389500	atrophin-1-like
bna-r.1	106413461	uncharacterized LOC106413461
cit-r.1	102620174	uncharacterized LOC102620174
cit-r.1	102618947	uncharacterized LOC102618947
gma-u.5	100780476	protein AIR1
gma-u.5	100794448	zinc finger CCHC domain-containing protein 7
vvi-u.5	100259916	uncharacterized LOC100259916
vvi-u.5	100252970	uncharacterized LOC100252970
ppo-u.5	7469918	cellular nucleic acid-binding protein homolog
ppo-u.5	7478597	uncharacterized LOC7478597
ppo-u.5	18098036	uncharacterized LOC18098036
mtr-u.5	112420400	zinc finger CCHC domain-containing protein 7
mtr-u.5	112422218	zinc finger CCHC domain-containing protein 7
sly-u.5	101257334	uncharacterized LOC101257334
sly-u.5	101259478	uncharacterized LOC101259478
sly-u.5	101265444	uncharacterized LOC101265444
sot-r.1	102584566	protein AIR1-like
sot-r.1	102587480	zinc finger protein GIS2-like
sot-r.1	102593191	protein AIR2-like
nta-r.1	107820934	uncharacterized LOC107820934
nta-r.1	107812026	uncharacterized LOC107812026
nta-r.1	107786809	uncharacterized LOC107786809
osa-u.5	4350762	uncharacterized LOC4350762
zma-u.5	103654520	zinc finger CCHC domain-containing protein 7-like
zma-u.5	100274278	zinc knuckle (CCHC-type) family protein
tae-r.2	123148924	zinc finger CCHC domain-containing protein 7
tae-r.2	123165953	zinc finger CCHC domain-containing protein 7
tae-r.2	123158188	zinc finger CCHC domain-containing protein 7
hvu-r.1	123408827	zinc finger CCHC domain-containing protein 7-like
sbi-r.1	8062651	protein AIR1
bdi-r.1	100831383	zinc finger CCHC domain-containing protein 7
cre-r.1	CHLRE_01g013800v5	uncharacterized protein

Top 50 coexpressed genes to 107920667 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107920667 (ghi-r.1 coexpression data)

CoexMap"107920667"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0008270 [list] [network] zinc ion binding	(1753 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(9083 genes)	IEA

Protein

XP_016705971.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_016705971.1)

Subcellular
localization
TargetP

other 7

(predict for XP_016705971.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107920667	ghi-r.1 for 107899200	ghi-r.1 for 107894978	ghi-r.1 for 107894219	ath-u.5 for AT3G43590	bra-r.6 for 103848033	bra-r.6 for 103842474	bna-r.1 for 106406397	bna-r.1 for 106389500	bna-r.1 for 106413461	cit-r.1 for 102620174	cit-r.1 for 102618947	gma-u.5 for 100780476	gma-u.5 for 100794448	vvi-u.5 for 100259916	vvi-u.5 for 100252970	ppo-u.5 for 7469918	ppo-u.5 for 7478597	ppo-u.5 for 18098036	mtr-u.5 for 112420400	mtr-u.5 for 112422218	sly-u.5 for 101257334	sly-u.5 for 101259478	sly-u.5 for 101265444	sot-r.1 for 102584566	sot-r.1 for 102587480	sot-r.1 for 102593191	nta-r.1 for 107820934	nta-r.1 for 107812026	nta-r.1 for 107786809	osa-u.5 for 4350762	zma-u.5 for 103654520	zma-u.5 for 100274278	tae-r.2 for 123148924	tae-r.2 for 123165953	tae-r.2 for 123158188	hvu-r.1 for 123408827	sbi-r.1 for 8062651	bdi-r.1 for 100831383	cre-r.1 for CHLRE_01g013800v5

Ortholog

Ortholog ID: 3346

Species

ghi

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

zinc finger CCHC domain-containing protein 7

cold shock protein 1

zinc finger CCHC domain-containing protein 13-like

protein AIR1

uncharacterized LOC103842474

uncharacterized LOC106413461

uncharacterized LOC106369565

protein AIR1-like

uncharacterized LOC102620174

uncharacterized LOC102618947

protein AIR1

zinc finger CCHC domain-containing protein 7

uncharacterized LOC100259916

uncharacterized LOC100252970

cellular nucleic acid-binding protein homolog

uncharacterized LOC7478597

uncharacterized LOC18098036

zinc finger CCHC domain-containing protein 7

uncharacterized LOC101257334

uncharacterized LOC101259478

uncharacterized LOC101265444

protein AIR1-like

zinc finger protein GIS2-like

protein AIR2-like

uncharacterized LOC107786809

uncharacterized LOC107785007

uncharacterized LOC107823133

uncharacterized LOC4350762

zinc finger CCHC domain-containing protein 7-like

zinc knuckle (CCHC-type) family protein

zinc finger CCHC domain-containing protein 7

zinc finger CCHC domain-containing protein 7-like

protein AIR1

zinc finger CCHC domain-containing protein 7

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	12
ghi03022	Basal transcription factors	2
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03460	Fanconi anemia pathway	3
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00710	Carbon fixation by Calvin cycle	2
ghi01200	Carbon metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03250	Viral life cycle - HIV-1	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3
gma03040	Spliceosome	3
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	3
vvi03040	Spliceosome	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	3
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2
sot04141	Protein processing in endoplasmic reticulum	2
sot03013	Nucleocytoplasmic transport	2
sot03015	mRNA surveillance pathway	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4
sot03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2
nta03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma03013	Nucleocytoplasmic transport	3
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	9
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	2

Expression

Expression pattern

Entrez Gene ID^*

107920667

107899200

121225071

103848033

103842474

106413461

106369565

106347704

102620174

102618947

100780476

100794448

100259916

100252970

7469918

7478597

18098036

112420400

112422218

101257334

101259478

101265444

102584566

102587480

102593191

107786809

107785007

107823133

4350762

103654520

100274278

123148924

123165953

123158188

123408827

8062651

100831383

66051992

The preparation time of this page was 0.5 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	1	2	3	2	2	2	3	2	3	3	3	1	2	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107920667 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107920667 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**