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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107920895   40S ribosomal protein S28 
 ghi-r.1   107891219   40S ribosomal protein S28 
 ghi-r.1   107903587   40S ribosomal protein S28 
 ghi-r.1   107935967   40S ribosomal protein S28 
 ath-u.5   AT3G10090   Nucleic acid-binding, OB-fold-like protein 
 ath-u.5   AT5G03850   Nucleic acid-binding, OB-fold-like protein 
 ath-u.5   RPS28   ribosomal protein S28 
 bra-r.6   103847354   40S ribosomal protein S28-1 
 bra-r.6   103850516   40S ribosomal protein S28-2 
 bra-r.6   103855542   40S ribosomal protein S28-1 
 bna-r.1   111210087   40S ribosomal protein S28-1 
 bna-r.1   106433845   40S ribosomal protein S28-1 
 cit-r.1   102622872   40S ribosomal protein S28 
 gma-u.5   100818200   40S ribosomal protein S28 
 gma-u.5   100306357   40S ribosomal protein S28 
 gma-u.5   100788626   40S ribosomal protein S28 
 ppo-u.5   7486865   40S ribosomal protein S28-2 
 ppo-u.5   7488050   40S ribosomal protein S28-2 
 ppo-u.5   7491591   40S ribosomal protein S28-2 
 mtr-u.5   11441897   40S ribosomal protein S28-1 
 mtr-u.5   11414922   40S ribosomal protein S28-1 
 mtr-u.5   11412510   40S ribosomal protein S28 
 sly-u.5   101260729   small ribosomal subunit protein eS28-like 
 sly-u.5   101258605   small ribosomal subunit protein eS28 
 sly-u.5   101248825   small ribosomal subunit protein eS28 
 sot-r.1   102583160   40S ribosomal protein S28 
 sot-r.1   102603576   40S ribosomal protein S28-like 
 osa-u.5   4348607   small ribosomal subunit protein eS28 
 osa-u.5   4331742   small ribosomal subunit protein eS28 
 zma-u.5   100281083   40S ribosomal protein S28 
 zma-u.5   100280891   40S ribosomal protein S28 
 zma-u.5   100280715   40S ribosomal protein S28 
 tae-r.2   123072852   40S ribosomal protein S28 
 tae-r.2   123063701   40S ribosomal protein S28 
 tae-r.2   123063705   40S ribosomal protein S28 
 hvu-r.1   123445709   40S ribosomal protein S28 
 hvu-r.1   123445707   40S ribosomal protein S28 
 sbi-r.1   8082135   40S ribosomal protein S28 
 sbi-r.1   110431762   40S ribosomal protein S28 
 bdi-r.1   104584494   40S ribosomal protein S28 
 bdi-r.1   100831273   40S ribosomal protein S28 
 cre-r.1   CHLRE_12g510450v5   ribosomal protein S28 

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Top 50 coexpressed genes to 107920895 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107920895 (ghi-r.1 coexpression data)

CoexMap"107920895"


ghiLOC107920895 | Entrez gene ID : 107920895    
Species ghi ath bra bna cit gma ppo mtr sly sot osa zma tae hvu sbi bdi cre nta vvi
Paralog 4 3 3 2 1 3 3 3 3 2 2 3 3 2 2 2 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03010 [list] [network] Ribosome (2429 genes)
GO BP
GO:0000028 [list] [network] ribosomal small subunit assembly  (100 genes)  IEA  
GO:0030490 [list] [network] maturation of SSU-rRNA  (115 genes)  IEA  
GO:0006412 [list] [network] translation  (1487 genes)  IEA  
GO CC
GO:0022627 [list] [network] cytosolic small ribosomal subunit  (268 genes)  IEA  
GO:0005840 [list] [network] ribosome  (1110 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (1075 genes)  IEA  
Protein XP_016706208.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  plas 2,  cyto_nucl 2,  chlo 1,  mito 1,  chlo_mito 1,  nucl_plas 1  (predict for XP_016706208.1)
Subcellular
localization
TargetP
other 5  (predict for XP_016706208.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107920895
ghi-r.1
for
107891219
ghi-r.1
for
107903587
ghi-r.1
for
107935967
ath-u.5
for
AT3G10090
ath-u.5
for
AT5G03850
ath-u.5
for
RPS28
bra-r.6
for
103847354
bra-r.6
for
103850516
bra-r.6
for
103855542
bna-r.1
for
111210087
bna-r.1
for
106433845
cit-r.1
for
102622872
gma-u.5
for
100818200
gma-u.5
for
100306357
gma-u.5
for
100788626
ppo-u.5
for
7486865
ppo-u.5
for
7488050
ppo-u.5
for
7491591
mtr-u.5
for
11441897
mtr-u.5
for
11414922
mtr-u.5
for
11412510
sly-u.5
for
101260729
sly-u.5
for
101258605
sly-u.5
for
101248825
sot-r.1
for
102583160
sot-r.1
for
102603576
osa-u.5
for
4348607
osa-u.5
for
4331742
zma-u.5
for
100281083
zma-u.5
for
100280891
zma-u.5
for
100280715
tae-r.2
for
123072852
tae-r.2
for
123063701
tae-r.2
for
123063705
hvu-r.1
for
123445709
hvu-r.1
for
123445707
sbi-r.1
for
8082135
sbi-r.1
for
110431762
bdi-r.1
for
104584494
bdi-r.1
for
100831273
cre-r.1
for
CHLRE_12g510450v5


Ortholog ID: 2404
Species ghi ghi ghi ath ath ath bra bra bna bna cit gma gma gma ppo ppo ppo mtr mtr mtr sly sly sly sot sot osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC107891219 LOC107899233 LOC107889469 AT3G10090 AT5G03850 RPS28 LOC103850516 LOC103837515 LOC106433845 LOC106428501 LOC102622872 LOC100818200 LOC100790570 LOC100811085 LOC7486865 LOC7488050 LOC7491591 LOC11441897 LOC11414922 LOC11412510 LOC101260729 LOC101258605 LOC101248825 LOC102583160 LOC102603576 LOC4348607 LOC4331742 LOC100281083 LOC100280891 LOC100280715 LOC123081010 LOC123081012 LOC123083827 LOC123445709 LOC123445707 LOC8082135 LOC110431762 LOC104584494 LOC100831273 CHLRE_12g510450v5
Function* 40S ribosomal protein S28 40S ribosomal protein S28 40S ribosomal protein S28 Nucleic acid-binding, OB-fold-like protein Nucleic acid-binding, OB-fold-like protein ribosomal protein S28 40S ribosomal protein S28-2 40S ribosomal protein S28-2 40S ribosomal protein S28-1 40S ribosomal protein S28-1 40S ribosomal protein S28 40S ribosomal protein S28 40S ribosomal protein S28 40S ribosomal protein S28 40S ribosomal protein S28-2 40S ribosomal protein S28-2 40S ribosomal protein S28-2 40S ribosomal protein S28-1 40S ribosomal protein S28-1 40S ribosomal protein S28 small ribosomal subunit protein eS28-like small ribosomal subunit protein eS28 small ribosomal subunit protein eS28 40S ribosomal protein S28 40S ribosomal protein S28-like small ribosomal subunit protein eS28 small ribosomal subunit protein eS28 40S ribosomal protein S28 40S ribosomal protein S28 40S ribosomal protein S28 40S ribosomal protein S28 40S ribosomal protein S28 uncharacterized LOC123083827 40S ribosomal protein S28 40S ribosomal protein S28 40S ribosomal protein S28 40S ribosomal protein S28 40S ribosomal protein S28 40S ribosomal protein S28 ribosomal protein S28
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi03015 mRNA surveillance pathway 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 10
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 10
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03040 Spliceosome 2
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 16
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 16
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 20
hvu04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 10
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 20
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107891219 107899233 107889469 820170 831692 836535 103850516 103837515 106433845 106428501 102622872 100818200 100790570 100811085 7486865 7488050 7491591 11441897 11414922 11412510 101260729 101258605 101248825 102583160 102603576 4348607 4331742 100281083 100280891 100280715 123081010 123081012 123083827 123445709 123445707 8082135 110431762 104584494 100831273 5716568
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