ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107921370	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
ath-u.5	ATB BETA	Protein phosphatase 2A, regulatory subunit PR55
ath-u.5	B ALPHA	protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform
gma-u.5	100789058	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
gma-u.5	100790801	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
gma-u.5	100795137	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
vvi-u.5	100266437	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
vvi-u.5	100265267	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
vvi-u.5	100257641	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
ppo-u.5	18096730	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
ppo-u.5	7463742	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
ppo-u.5	7457753	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
mtr-u.5	11425778	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
mtr-u.5	11419844	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
mtr-u.5	25500415	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
sly-u.5	101260240	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
sly-u.5	101246329	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
sly-u.5	101251957	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
osa-u.5	4328769	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
osa-u.5	9270873	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
osa-u.5	4341313	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
zma-u.5	100193694	uncharacterized LOC100193694
zma-u.5	100383125	uncharacterized LOC100383125
zma-u.5	100191991	serine/threonine protein phosphatase regulatory subunit Bbeta isoform

Top 50 coexpressed genes to 107921370 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107921370 (ghi-r.1 coexpression data)

CoexMap"107921370"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0000159 [list] [network] protein phosphatase type 2A complex	(85 genes)	IEA
GO:0005829 [list] [network] cytosol	(2580 genes)	IEA

GO MF

GO:0019888 [list] [network] protein phosphatase regulator activity

(248 genes)

IEA

Protein

XP_040943030.1 [sequence] [blastp]
XP_040943031.1 [sequence] [blastp]

Subcellular
localization
wolf

cysk 6, cyto 2, chlo 1, nucl 1	(predict for XP_040943030.1)
cyto 5, chlo 3, cyto_nucl 3	(predict for XP_040943031.1)

Subcellular
localization
TargetP

other 7	(predict for XP_040943030.1)
other 6	(predict for XP_040943031.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107921370	ath-u.5 for ATB BETA	ath-u.5 for B ALPHA	gma-u.5 for 100789058	gma-u.5 for 100790801	gma-u.5 for 100795137	vvi-u.5 for 100266437	vvi-u.5 for 100265267	vvi-u.5 for 100257641	ppo-u.5 for 18096730	ppo-u.5 for 7463742	ppo-u.5 for 7457753	mtr-u.5 for 11425778	mtr-u.5 for 11419844	mtr-u.5 for 25500415	sly-u.5 for 101260240	sly-u.5 for 101246329	sly-u.5 for 101251957	osa-u.5 for 4328769	osa-u.5 for 9270873	osa-u.5 for 4341313	zma-u.5 for 100193694	zma-u.5 for 100383125	zma-u.5 for 100191991

Ortholog

Ortholog ID: 1027

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

B ALPHA

Function^*

serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B

protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform

Protein phosphatase 2A, regulatory subunit PR55

serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B

uncharacterized LOC100383125

Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B

serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	9
ghi04382	Cornified envelope formation	8
ghi00561	Glycerolipid metabolism	2
ghi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	3
ghi04382	Cornified envelope formation	3
ghi00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2
ath04120	Ubiquitin mediated proteolysis	2
ath00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2
bra03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04382	Cornified envelope formation	4
bra03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04382	Cornified envelope formation	8
bna03015	mRNA surveillance pathway	6
bna00600	Sphingolipid metabolism	2
bna04144	Endocytosis	2
bna04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	7
bna04382	Cornified envelope formation	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	2
cit03015	mRNA surveillance pathway	2
cit04382	Cornified envelope formation	2
cit00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00970	Aminoacyl-tRNA biosynthesis	3
cit00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	3
gma04382	Cornified envelope formation	3
gma00562	Inositol phosphate metabolism	2
gma04070	Phosphatidylinositol signaling system	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	2
mtr03022	Basal transcription factors	2
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	3
sly04382	Cornified envelope formation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	5
sly04382	Cornified envelope formation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	4
sot04141	Protein processing in endoplasmic reticulum	3
sot03015	mRNA surveillance pathway	3
sot04382	Cornified envelope formation	3
sot05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2
nta00020	Citrate cycle (TCA cycle)	2
nta00480	Glutathione metabolism	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	6
nta04382	Cornified envelope formation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3
osa04142	Lysosome	2
osa03015	mRNA surveillance pathway	2
osa04382	Cornified envelope formation	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	3
osa04382	Cornified envelope formation	3
osa04144	Endocytosis	2
osa04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3
zma04382	Cornified envelope formation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3
zma04382	Cornified envelope formation	3
zma04120	Ubiquitin mediated proteolysis	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	4
tae03015	mRNA surveillance pathway	3
tae04382	Cornified envelope formation	3
tae05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	5
tae04382	Cornified envelope formation	5
tae03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	3
hvu04382	Cornified envelope formation	3
hvu04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	3
bdi04141	Protein processing in endoplasmic reticulum	3
bdi03060	Protein export	2
bdi00510	N-Glycan biosynthesis	2
bdi04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	2
bdi03015	mRNA surveillance pathway	2
bdi04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03015	mRNA surveillance pathway	4
cre00190	Oxidative phosphorylation	3
cre04382	Cornified envelope formation	3

Expression

Expression pattern

Entrez Gene ID^*

107891721

107895343

841594

838348

103871268

103835944

106427161

125609510

102608811

102628048

100795137

100790801

100265267

100257641

7463742

18096730

11419844

11425778

101251957

101246329

102586381

102584203

107776791

107788567

4328769

4341313

100383125

100191387

123144474

123156267

123406345

123407426

8061986

110434866

100837992

100835234

5725732

The preparation time of this page was 0.4 [sec].


Species	ghi	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	sot	nta	cre	tae
Paralog	1	2	3	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107921370 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107921370 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**