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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107922495   transcription factor IIIB 90 kDa subunit 
 ghi-r.1   107916695   transcription factor IIIB 60 kDa subunit 
 ghi-r.1   107912745   transcription factor IIIB 90 kDa subunit 
 ghi-r.1   107893131   transcription factor IIIB 90 kDa subunit 
 ath-u.5   AT2G45100   Cyclin/Brf1-like TBP-binding protein 
 ath-u.5   AT3G09360   Cyclin/Brf1-like TBP-binding protein 
 bra-r.6   103859301   transcription factor IIIB 60 kDa subunit 
 bra-r.6   103859299   transcription factor IIIB 60 kDa subunit 
 bna-r.1   106439200   transcription factor IIIB 60 kDa subunit-like 
 bna-r.1   106388955   transcription factor IIIB 60 kDa subunit-like 
 cit-r.1   102618916   uncharacterized LOC102618916 
 gma-u.5   100817609   transcription factor IIIB 90 kDa subunit 
 gma-u.5   100789154   transcription factor IIIB 90 kDa subunit 
 vvi-u.5   100263800   uncharacterized LOC100263800 
 ppo-u.5   7481510   transcription factor IIIB 60 kDa subunit 
 ppo-u.5   18095052   transcription factor IIIB 60 kDa subunit 
 mtr-u.5   25495815   transcription factor IIIB 90 kDa subunit 
 mtr-u.5   11436961   transcription factor IIIB 90 kDa subunit 
 sly-u.5   101249300   transcription factor IIIB 60 kDa subunit 
 sot-r.1   102583078   transcription factor IIIB 60 kDa subunit-like 
 sot-r.1   102590442   transcription factor IIIB 60 kDa subunit 
 nta-r.1   107759451   transcription factor IIIB 60 kDa subunit-like 
 nta-r.1   107763335   transcription factor IIIB 60 kDa subunit-like 
 nta-r.1   107766432   transcription factor IIIB 60 kDa subunit 
 osa-u.5   4338362   transcription factor IIIB 60 kDa subunit 
 zma-u.5   103630672   transcription factor IIIB 60 kDa subunit 
 zma-u.5   103649193   uncharacterized LOC103649193 
 tae-r.2   123060356   transcription factor IIIB 60 kDa subunit 
 hvu-r.1   123442888   transcription factor IIIB 60 kDa subunit-like 
 sbi-r.1   8068996   transcription factor IIIB 90 kDa subunit 
 bdi-r.1   100842802   transcription factor IIIB 60 kDa subunit 
 bdi-r.1   100840180   transcription factor IIIB 90 kDa subunit 
 bdi-r.1   100825257   uncharacterized LOC100825257 
 cre-r.1   CHLRE_06g256420v5   uncharacterized protein 

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Top 50 coexpressed genes to 107922495 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107922495 (ghi-r.1 coexpression data)

CoexMap"107922495"


ghiLOC107922495 | Entrez gene ID : 107922495    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 2 1 2 1 2 2 1 2 3 1 2 1 1 1 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0070897 [list] [network] transcription preinitiation complex assembly  (47 genes)  IEA  
GO:0006383 [list] [network] transcription by RNA polymerase III  (66 genes)  IEA  
GO:0006352 [list] [network] DNA-templated transcription initiation  (147 genes)  IEA  
GO CC
GO:0000126 [list] [network] transcription factor TFIIIB complex  (6 genes)  IEA  
GO:0097550 [list] [network] transcription preinitiation complex  (16 genes)  IEA  
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0000995 [list] [network] RNA polymerase III general transcription initiation factor activity  (4 genes)  IEA  
GO:0001006 [list] [network] RNA polymerase III type 3 promoter sequence-specific DNA binding  (9 genes)  IEA  
GO:0017025 [list] [network] TBP-class protein binding  (26 genes)  IEA  
Protein XP_040965110.1 [sequence] [blastp]
XP_040965111.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 3,  cyto 1,  cysk_nucl 1  (predict for XP_040965110.1)
chlo 5,  nucl 3,  cyto 1,  cysk_nucl 1  (predict for XP_040965111.1)
Subcellular
localization
TargetP
other 7  (predict for XP_040965110.1)
other 7  (predict for XP_040965111.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107922495
ghi-r.1
for
107916695
ghi-r.1
for
107912745
ghi-r.1
for
107893131
ath-u.5
for
AT2G45100
ath-u.5
for
AT3G09360
bra-r.6
for
103859301
bra-r.6
for
103859299
bna-r.1
for
106439200
bna-r.1
for
106388955
cit-r.1
for
102618916
gma-u.5
for
100817609
gma-u.5
for
100789154
vvi-u.5
for
100263800
ppo-u.5
for
7481510
ppo-u.5
for
18095052
mtr-u.5
for
25495815
mtr-u.5
for
11436961
sly-u.5
for
101249300
sot-r.1
for
102583078
sot-r.1
for
102590442
nta-r.1
for
107759451
nta-r.1
for
107763335
nta-r.1
for
107766432
osa-u.5
for
4338362
zma-u.5
for
103630672
zma-u.5
for
103649193
tae-r.2
for
123060356
hvu-r.1
for
123442888
sbi-r.1
for
8068996
bdi-r.1
for
100842802
bdi-r.1
for
100840180
bdi-r.1
for
100825257
cre-r.1
for
CHLRE_06g256420v5


Ortholog ID: 2873
Species ghi ghi ghi ath ath bra bra bna bna cit gma gma vvi ppo ppo mtr mtr sly sot sot nta nta nta osa zma zma zma tae tae hvu sbi bdi bdi bdi cre
Symbol LOC107922495 LOC107912745 LOC107893131 AT3G09360 AT1G30455 LOC103859301 LOC103859299 LOC106439200 LOC106439194 LOC102618916 LOC100817609 LOC100789154 LOC100263800 LOC7481510 LOC18095052 LOC25495815 LOC11436961 LOC101249300 LOC102583078 LOC102590442 LOC107759451 LOC107763335 LOC107766432 LOC4338362 LOC103630672 LOC103635274 LOC109946121 LOC123103871 LOC123077408 LOC123442888 LOC8068996 LOC100842802 LOC100840180 LOC100825257 CHLRE_06g256420v5
Function* transcription factor IIIB 90 kDa subunit transcription factor IIIB 90 kDa subunit transcription factor IIIB 90 kDa subunit Cyclin/Brf1-like TBP-binding protein cyclin/Brf1-like TBP-binding domain-containing protein transcription factor IIIB 60 kDa subunit transcription factor IIIB 60 kDa subunit transcription factor IIIB 60 kDa subunit-like transcription factor IIIB 60 kDa subunit uncharacterized LOC102618916 transcription factor IIIB 90 kDa subunit transcription factor IIIB 90 kDa subunit uncharacterized LOC100263800 transcription factor IIIB 60 kDa subunit transcription factor IIIB 60 kDa subunit transcription factor IIIB 90 kDa subunit transcription factor IIIB 90 kDa subunit transcription factor IIIB 60 kDa subunit transcription factor IIIB 60 kDa subunit-like transcription factor IIIB 60 kDa subunit transcription factor IIIB 60 kDa subunit-like transcription factor IIIB 60 kDa subunit-like transcription factor IIIB 60 kDa subunit transcription factor IIIB 60 kDa subunit transcription factor IIIB 60 kDa subunit transcription factor IIIB 90 kDa subunit-like transcription factor IIIB 90 kDa subunit transcription factor IIIB 90 kDa subunit transcription factor IIIB 60 kDa subunit transcription factor IIIB 60 kDa subunit-like transcription factor IIIB 90 kDa subunit transcription factor IIIB 60 kDa subunit transcription factor IIIB 90 kDa subunit uncharacterized LOC100825257 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03013 Nucleocytoplasmic transport 2
mtr03010 Ribosome 2
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03083 Polycomb repressive complex 3
osa04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00053 Ascorbate and aldarate metabolism 4
zma00480 Glutathione metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 2
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
tae03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 4
hvu03040 Spliceosome 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi03040 Spliceosome 2
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00561 Glycerolipid metabolism 2
bdi00564 Glycerophospholipid metabolism 2
bdi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107922495 107912745 107893131 820092 6240845 103859301 103859299 106439200 106439194 102618916 100817609 100789154 100263800 7481510 18095052 25495815 11436961 101249300 102583078 102590442 107759451 107763335 107766432 4338362 103630672 103635274 109946121 123103871 123077408 123442888 8068996 100842802 100840180 100825257 5722115
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