ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	107922525	protein FAR-RED IMPAIRED RESPONSE 1
ghi-r.1	107951941	protein FAR-RED IMPAIRED RESPONSE 1
ghi-r.1	107924192	protein FAR-RED IMPAIRED RESPONSE 1
ghi-r.1	107912663	protein FAR-RED IMPAIRED RESPONSE 1
ath-u.5	FAR1	FRS (FAR1 Related Sequences) transcription factor family
bra-r.6	103871343	protein FAR-RED IMPAIRED RESPONSE 1
bna-r.1	106411379	protein FAR-RED IMPAIRED RESPONSE 1
bna-r.1	106406253	protein FAR-RED IMPAIRED RESPONSE 1
bna-r.1	125597426	protein FAR-RED IMPAIRED RESPONSE 1-like
cit-r.1	102621332	protein FAR1-RELATED SEQUENCE 1
cit-r.1	102625461	protein FAR-RED IMPAIRED RESPONSE 1
gma-u.5	100814153	protein FAR-RED IMPAIRED RESPONSE 1
gma-u.5	100805377	protein FAR-RED IMPAIRED RESPONSE 1
gma-u.5	100792626	protein FAR-RED IMPAIRED RESPONSE 1
vvi-u.5	100262925	protein FAR-RED IMPAIRED RESPONSE 1
vvi-u.5	100251986	protein FAR-RED IMPAIRED RESPONSE 1
ppo-u.5	18097012	protein FAR-RED IMPAIRED RESPONSE 1
ppo-u.5	7495635	protein FAR-RED IMPAIRED RESPONSE 1
mtr-u.5	112416729	protein FAR-RED IMPAIRED RESPONSE 1
sly-u.5	101258392	protein FAR-RED IMPAIRED RESPONSE 1
sly-u.5	101248454	protein FAR-RED IMPAIRED RESPONSE 1
sot-r.1	102605725	protein FAR-RED IMPAIRED RESPONSE 1
sot-r.1	102595976	protein FAR-RED IMPAIRED RESPONSE 1
nta-r.1	107814854	protein FAR-RED IMPAIRED RESPONSE 1
nta-r.1	107815231	protein FAR-RED IMPAIRED RESPONSE 1
nta-r.1	107826696	protein FAR-RED IMPAIRED RESPONSE 1

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(4318 genes)

IEA

GO CC

GO MF

GO:0008270 [list] [network] zinc ion binding

(1753 genes)

IEA

Protein

XP_040942453.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto 1, vacu 1

(predict for XP_040942453.1)

Subcellular
localization
TargetP

other 8

(predict for XP_040942453.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107922525	ghi-r.1 for 107951941	ghi-r.1 for 107924192	ghi-r.1 for 107912663	ath-u.5 for FAR1	bra-r.6 for 103871343	bna-r.1 for 106411379	bna-r.1 for 106406253	bna-r.1 for 125597426	cit-r.1 for 102621332	cit-r.1 for 102625461	gma-u.5 for 100814153	gma-u.5 for 100805377	gma-u.5 for 100792626	vvi-u.5 for 100262925	vvi-u.5 for 100251986	ppo-u.5 for 18097012	ppo-u.5 for 7495635	mtr-u.5 for 112416729	sly-u.5 for 101258392	sly-u.5 for 101248454	sot-r.1 for 102605725	sot-r.1 for 102595976	nta-r.1 for 107814854	nta-r.1 for 107815231	nta-r.1 for 107826696

Ortholog

Ortholog ID: 9015

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

Symbol

FAR1

Function^*

protein FAR-RED IMPAIRED RESPONSE 1

FRS (FAR1 Related Sequences) transcription factor family

protein FAR-RED IMPAIRED RESPONSE 1

protein FAR-RED IMPAIRED RESPONSE 1-like

protein FAR1-RELATED SEQUENCE 1

protein FAR-RED IMPAIRED RESPONSE 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00562	Inositol phosphate metabolism	4
ghi04070	Phosphatidylinositol signaling system	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00562	Inositol phosphate metabolism	4
ghi04070	Phosphatidylinositol signaling system	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	2
bra00562	Inositol phosphate metabolism	2
bra04070	Phosphatidylinositol signaling system	2
bra03083	Polycomb repressive complex	2
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00310	Lysine degradation	5
bna03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2
mtr04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03250	Viral life cycle - HIV-1	2

Expression

Expression pattern

Entrez Gene ID^*

107922525

107951941

107912663

827173

103871343

106411379

106406253

125597426

102621332

102625461

100814153

100805377

100792626

100262925

100251986

18097012

7495635

112416729

101258392

101248454

102605725

102595976

107814854

107815231

107826696

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107922525 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107922525 (ghi-r.1 coexpression data)


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	bdi	osa	tae	zma	cre	sbi	hvu
Paralog	4	1	1	3	2	3	2	2	1	2	2	3	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107922525 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107922525 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**