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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7495635   protein FAR-RED IMPAIRED RESPONSE 1 
 ppo-r.4   7495635   protein FAR-RED IMPAIRED RESPONSE 1 
 ppo-m.4   7495635   protein FAR-RED IMPAIRED RESPONSE 1 
 ppo-u.5   18097012   protein FAR-RED IMPAIRED RESPONSE 1 
 gma-u.5   100792626   protein FAR-RED IMPAIRED RESPONSE 1 
 gma-u.5   100805377   protein FAR-RED IMPAIRED RESPONSE 1 
 gma-u.5   100814153   protein FAR-RED IMPAIRED RESPONSE 1 
 mtr-u.5   112416729   protein FAR-RED IMPAIRED RESPONSE 1 
 ath-u.5   FAR1   FRS (FAR1 Related Sequences) transcription factor family 
 vvi-u.5   100262925   protein FAR-RED IMPAIRED RESPONSE 1 
 vvi-u.5   100251986   protein FAR-RED IMPAIRED RESPONSE 1 
 sly-u.5   101258392   protein FAR-RED IMPAIRED RESPONSE 1 
 sly-u.5   101248454   protein FAR-RED IMPAIRED RESPONSE 1 

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Top 50 coexpressed genes to 7495635 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7495635 (ppo-u.5 coexpression data)

CoexMap"7495635"


ppoLOC7495635 | Entrez gene ID : 7495635    
Species ppo gma mtr ath vvi sly sbi nta bra osa cre cit hvu bdi sot zma tae bna ghi
Paralog 4 3 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1948 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
Protein XP_002308819.2 [sequence] [blastp]
XP_024459852.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1,  pero 1  (predict for XP_002308819.2)
nucl 9,  chlo 1,  pero 1  (predict for XP_024459852.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002308819.2)
other 8  (predict for XP_024459852.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7495635

.
ppo-r.4
for
7495635

.
ppo-m.4
for
7495635

.
ppo-u.5
for
18097012

.
gma-u.5
for
100792626

.
gma-u.5
for
100805377

.
gma-u.5
for
100814153

.
mtr-u.5
for
112416729

.
ath-u.5
for
FAR1

.
vvi-u.5
for
100262925

.
vvi-u.5
for
100251986

.
sly-u.5
for
101258392

.
sly-u.5
for
101248454

.


Ortholog ID: 9015
Species ath gma gma sly sly bra vvi vvi ppo ppo mtr ghi ghi bna bna sot sot cit cit nta nta
Symbol FAR1 LOC100805377 LOC100792626 LOC101258392 LOC101248454 LOC103871343 LOC100262925 LOC100251986 LOC18097012 LOC7495635 LOC112416729 LOC107951941 LOC107922525 LOC106406253 LOC106411379 LOC102595976 LOC102605725 LOC102621332 LOC102625461 LOC107826696 LOC107815231
Function* FRS (FAR1 Related Sequences) transcription factor family protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR1-RELATED SEQUENCE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
bra00562 Inositol phosphate metabolism 2
bra04070 Phosphatidylinositol signaling system 2
bra03083 Polycomb repressive complex 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 4
ghi04070 Phosphatidylinositol signaling system 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 4
ghi04070 Phosphatidylinositol signaling system 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00310 Lysine degradation 5
bna03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03250 Viral life cycle - HIV-1 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827173 100805377 100792626 101258392 101248454 103871343 100262925 100251986 18097012 7495635 112416729 107951941 107922525 106406253 106411379 102595976 102605725 102621332 102625461 107826696 107815231
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