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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107929991   cullin-1 
 ghi-r.1   107910805   cullin-1 
 ghi-r.1   107908417   cullin-1 
 ghi-r.1   107896706   cullin-1 
 ath-u.5   CUL1   cullin 1 
 bra-r.6   103858756   cullin-1 
 cit-r.1   102612067   cullin-1 
 cit-r.1   102625018   cullin-1 
 gma-u.5   100778287   cullin-1 
 gma-u.5   100819650   cullin-1 
 gma-u.5   100793682   cullin-1 
 vvi-u.5   100261361   cullin-1 
 vvi-u.5   100233054   cullin-1 
 ppo-u.5   18101833   cullin-1 
 ppo-u.5   7475961   cullin-1 
 ppo-u.5   7479228   cullin-1 
 mtr-u.5   11413169   cullin-1 
 mtr-u.5   11422872   cullin-1 
 sly-u.5   101247231   cullin-1-like 
 sly-u.5   101248129   cullin-1-like 
 sot-r.1   102603007   cullin-1-like 
 sot-r.1   102603683   cullin-1-like 
 sot-r.1   102596603   cullin-1-like 
 nta-r.1   142174705   cullin-1-like 
 nta-r.1   107759321   cullin-1 
 nta-r.1   107770609   cullin-1 
 osa-u.5   4337820   cullin-1-like 
 zma-u.5   103641392   cullin-1 
 zma-u.5   103635893   cullin-1-like 
 tae-r.2   123112630   cullin-1 
 tae-r.2   123191203   cullin-1 
 hvu-r.1   123425326   cullin-1-like 
 hvu-r.1   123425335   cullin-1 
 sbi-r.1   8075980   cullin-1 
 sbi-r.1   8086363   cullin-1 
 bdi-r.1   100824990   cullin-1 
 bdi-r.1   100824498   cullin-1 
 cre-r.1   CHLRE_17g734400v5   uncharacterized protein 

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Top 50 coexpressed genes to 107929991 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107929991 (ghi-r.1 coexpression data)

CoexMap"107929991"


ghiLOC107929991 | Entrez gene ID : 107929991    
Species ghi ath bra cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre bna
Paralog 4 1 1 2 3 2 3 2 2 3 3 1 2 2 2 2 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi04120 [list] [network] Ubiquitin mediated proteolysis (368 genes)
ghi04141 [list] [network] Protein processing in endoplasmic reticulum (593 genes)
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (782 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (962 genes)  IEA  
GO CC
GO:0031461 [list] [network] cullin-RING ubiquitin ligase complex  (306 genes)  IEA  
GO MF
GO:0031625 [list] [network] ubiquitin protein ligase binding  (108 genes)  IEA  
Protein XP_016717039.2 [sequence] [blastp]
XP_016717045.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9,  chlo 1,  nucl 1  (predict for XP_016717039.2)
cyto 9,  chlo 1,  nucl 1  (predict for XP_016717045.2)
Subcellular
localization
TargetP
other 9  (predict for XP_016717039.2)
other 9  (predict for XP_016717045.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107929991
ghi-r.1
for
107910805
ghi-r.1
for
107908417
ghi-r.1
for
107896706
ath-u.5
for
CUL1
bra-r.6
for
103858756
cit-r.1
for
102612067
cit-r.1
for
102625018
gma-u.5
for
100778287
gma-u.5
for
100819650
gma-u.5
for
100793682
vvi-u.5
for
100261361
vvi-u.5
for
100233054
ppo-u.5
for
18101833
ppo-u.5
for
7475961
ppo-u.5
for
7479228
mtr-u.5
for
11413169
mtr-u.5
for
11422872
sly-u.5
for
101247231
sly-u.5
for
101248129
sot-r.1
for
102603007
sot-r.1
for
102603683
sot-r.1
for
102596603
nta-r.1
for
142174705
nta-r.1
for
107759321
nta-r.1
for
107770609
osa-u.5
for
4337820
zma-u.5
for
103641392
zma-u.5
for
103635893
tae-r.2
for
123112630
tae-r.2
for
123191203
hvu-r.1
for
123425326
hvu-r.1
for
123425335
sbi-r.1
for
8075980
sbi-r.1
for
8086363
bdi-r.1
for
100824990
bdi-r.1
for
100824498
cre-r.1
for
CHLRE_17g734400v5


Ortholog ID: 711
Species ghi ghi ghi ath bra bra cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa zma zma tae tae hvu hvu sbi bdi bdi cre
Symbol LOC107908417 LOC107888927 LOC107916074 CUL1 LOC103858756 LOC103836734 LOC102612067 LOC100778287 LOC100793682 LOC100779134 LOC100261361 LOC100233054 LOC18101833 LOC18101828 LOC18094407 LOC25494069 LOC25488176 LOC25494071 LOC101248129 LOC101249294 LOC101255534 LOC102598676 LOC102592316 LOC102579979 LOC107778339 LOC107783701 LOC142179439 LOC4337820 LOC4325735 LOC103641392 LOC103635893 LOC123191203 LOC123191196 LOC123425326 LOC123425335 LOC8086363 LOC100824990 LOC100824498 CHLRE_17g734400v5
Function* cullin-1 cullin-1 cullin-1 cullin 1 cullin-1 cullin-1 cullin-1 cullin-1 cullin-1 cullin-1 cullin-1 cullin-1 cullin-1 cullin-1 cullin-1 cullin-1 cullin-1 cullin-1 cullin-1-like cullin-1 cullin-1 cullin-1-like cullin-1-like cullin-1-like cullin-1-like cullin-1-like cullin-1-like cullin-1-like cullin-1-like cullin-1 cullin-1-like cullin-1 cullin-1 cullin-1-like cullin-1 cullin-1 cullin-1 cullin-1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
ghi00030 Pentose phosphate pathway 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 6
ghi04141 Protein processing in endoplasmic reticulum 6
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 6
ghi04141 Protein processing in endoplasmic reticulum 6
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 5
ath03013 Nucleocytoplasmic transport 3
ath03050 Proteasome 3
ath03083 Polycomb repressive complex 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 4
bra03040 Spliceosome 2
bra03008 Ribosome biogenesis in eukaryotes 2
bra03083 Polycomb repressive complex 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra04120 Ubiquitin mediated proteolysis 3
bra04141 Protein processing in endoplasmic reticulum 3
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 4
gma04141 Protein processing in endoplasmic reticulum 2
gma00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 7
gma04130 SNARE interactions in vesicular transport 3
gma04120 Ubiquitin mediated proteolysis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
vvi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
vvi03083 Polycomb repressive complex 2
vvi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 4
ppo04144 Endocytosis 3
ppo04141 Protein processing in endoplasmic reticulum 3
ppo05100 Bacterial invasion of epithelial cells 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 5
mtr04142 Lysosome 2
mtr03083 Polycomb repressive complex 2
mtr04120 Ubiquitin mediated proteolysis 2
mtr03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr03083 Polycomb repressive complex 3
mtr04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03060 Protein export 3
sly03050 Proteasome 3
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03022 Basal transcription factors 2
sly04120 Ubiquitin mediated proteolysis 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 6
sot04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 4
sot04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta04626 Plant-pathogen interaction 2
nta04120 Ubiquitin mediated proteolysis 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00100 Steroid biosynthesis 2
nta04120 Ubiquitin mediated proteolysis 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 4
zma04141 Protein processing in endoplasmic reticulum 3
zma03050 Proteasome 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 5
zma04120 Ubiquitin mediated proteolysis 3
zma03060 Protein export 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 3
tae04120 Ubiquitin mediated proteolysis 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 5
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 3
bdi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 8
cre04141 Protein processing in endoplasmic reticulum 4
cre03013 Nucleocytoplasmic transport 3
cre04120 Ubiquitin mediated proteolysis 3
cre03420 Nucleotide excision repair 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107908417 107888927 107916074 825648 103858756 103836734 102612067 100778287 100793682 100779134 100261361 100233054 18101833 18101828 18094407 25494069 25488176 25494071 101248129 101249294 101255534 102598676 102592316 102579979 107778339 107783701 142179439 4337820 4325735 103641392 103635893 123191203 123191196 123425326 123425335 8086363 100824990 100824498 5718619
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