ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_17g734400v5	uncharacterized protein
ath-u.5	CUL1	cullin 1
gma-u.5	100779134	cullin-1
gma-u.5	100819650	cullin-1
gma-u.5	100793682	cullin-1
sly-u.5	101247231	cullin-1-like
sly-u.5	101248129	cullin-1-like
osa-u.5	4337820	cullin-1-like
zma-u.5	103641392	cullin-1
zma-u.5	103635893	cullin-1-like
bra-r.6	103843720	cullin-1
bra-r.6	103836734	cullin-1
vvi-u.5	100261361	cullin-1
vvi-u.5	100233054	cullin-1
ppo-u.5	7479228	cullin-1
ppo-u.5	18101833	cullin-1
ppo-u.5	18094407	cullin-1
mtr-u.5	25494071	cullin-1
mtr-u.5	11425891	cullin-1
mtr-u.5	11443133	cullin-1
tae-r.2	123112630	cullin-1
tae-r.2	123191203	cullin-1
hvu-r.1	123425335	cullin-1
hvu-r.1	123425326	cullin-1-like
ghi-r.1	107929991	cullin-1
ghi-r.1	107888927	cullin-1
ghi-r.1	107891865	cullin-1
sbi-r.1	8075980	cullin-1
sbi-r.1	8086363	cullin-1
sot-r.1	102603007	cullin-1-like
sot-r.1	102603346	cullin-1-like
sot-r.1	102605003	cullin-1-like
cit-r.1	102612067	cullin-1
cit-r.1	102625018	cullin-1
bdi-r.1	100824498	cullin-1
bdi-r.1	100824990	cullin-1
nta-r.1	142174705	cullin-1-like
nta-r.1	107759321	cullin-1
nta-r.1	107770609	cullin-1

Top 50 coexpressed genes to CHLRE_17g734400v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_17g734400v5 (cre-r.1 coexpression data)

CoexMap"5718619"

[Cytoscape]

Annotation

functional annotation

KEGG

cre04120 [list] [network] Ubiquitin mediated proteolysis (48 genes)

cre04141 [list] [network] Protein processing in endoplasmic reticulum (76 genes)

GO BP

GO:0016567 [list] [network] protein ubiquitination	(136 genes)	IEA
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process	(159 genes)	IEA

GO CC

GO:0031461 [list] [network] cullin-RING ubiquitin ligase complex

(69 genes)

IEA

GO MF

GO:0031625 [list] [network] ubiquitin protein ligase binding

(17 genes)

IEA

Protein

XP_042914961.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 9, chlo 1, nucl 1

(predict for XP_042914961.1)

Subcellular
localization
TargetP

other 9

(predict for XP_042914961.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_17g734400v5	ath-u.5 for CUL1	gma-u.5 for 100779134	gma-u.5 for 100819650	gma-u.5 for 100793682	sly-u.5 for 101247231	sly-u.5 for 101248129	osa-u.5 for 4337820	zma-u.5 for 103641392	zma-u.5 for 103635893	bra-r.6 for 103843720	bra-r.6 for 103836734	vvi-u.5 for 100261361	vvi-u.5 for 100233054	ppo-u.5 for 7479228	ppo-u.5 for 18101833	ppo-u.5 for 18094407	mtr-u.5 for 25494071	mtr-u.5 for 11425891	mtr-u.5 for 11443133	tae-r.2 for 123112630	tae-r.2 for 123191203	hvu-r.1 for 123425335	hvu-r.1 for 123425326	ghi-r.1 for 107929991	ghi-r.1 for 107888927	ghi-r.1 for 107891865	sbi-r.1 for 8075980	sbi-r.1 for 8086363	sot-r.1 for 102603007	sot-r.1 for 102603346	sot-r.1 for 102605003	cit-r.1 for 102612067	cit-r.1 for 102625018	bdi-r.1 for 100824498	bdi-r.1 for 100824990	nta-r.1 for 142174705	nta-r.1 for 107759321	nta-r.1 for 107770609

Ortholog

Ortholog ID: 711

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

sbi

sot

cit

bdi

nta

Symbol

CUL1

Function^*

uncharacterized protein

cullin 1

cullin-1

cullin-1-like

cullin-1

cullin-1-like

cullin-1

cullin-1-like

cullin-1

cullin-1-like

cullin-1

cullin-1-like

cullin-1

cullin-1-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	8
cre04141	Protein processing in endoplasmic reticulum	4
cre03013	Nucleocytoplasmic transport	3
cre04120	Ubiquitin mediated proteolysis	3
cre03420	Nucleotide excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	5
ath03013	Nucleocytoplasmic transport	3
ath03050	Proteasome	3
ath03083	Polycomb repressive complex	2
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	7
gma04130	SNARE interactions in vesicular transport	3
gma04120	Ubiquitin mediated proteolysis	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	4
gma04141	Protein processing in endoplasmic reticulum	2
gma00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03060	Protein export	3
sly03050	Proteasome	3
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03022	Basal transcription factors	2
sly04120	Ubiquitin mediated proteolysis	2
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	4
zma04141	Protein processing in endoplasmic reticulum	3
zma03050	Proteasome	2
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	5
zma04120	Ubiquitin mediated proteolysis	3
zma03060	Protein export	2
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra04120	Ubiquitin mediated proteolysis	3
bra04141	Protein processing in endoplasmic reticulum	3
bra03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	4
bra03040	Spliceosome	2
bra03008	Ribosome biogenesis in eukaryotes	2
bra03083	Polycomb repressive complex	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	3
vvi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	2
vvi03083	Polycomb repressive complex	2
vvi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	4
ppo04144	Endocytosis	3
ppo04141	Protein processing in endoplasmic reticulum	3
ppo05100	Bacterial invasion of epithelial cells	2
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	3
mtr03083	Polycomb repressive complex	3
mtr04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	5
mtr04142	Lysosome	2
mtr03083	Polycomb repressive complex	2
mtr04120	Ubiquitin mediated proteolysis	2
mtr03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3
tae04120	Ubiquitin mediated proteolysis	3
tae04141	Protein processing in endoplasmic reticulum	3
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	5
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2
hvu00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2
hvu03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	6
ghi04141	Protein processing in endoplasmic reticulum	6
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2
ghi04075	Plant hormone signal transduction	2
ghi00030	Pentose phosphate pathway	2
ghi00040	Pentose and glucuronate interconversions	2
ghi00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	6
ghi04141	Protein processing in endoplasmic reticulum	6
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	6
sot04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	4
sot04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	3
bdi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2
nta04626	Plant-pathogen interaction	2
nta04120	Ubiquitin mediated proteolysis	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00100	Steroid biosynthesis	2
nta04120	Ubiquitin mediated proteolysis	2
nta04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

5718619

825648

100779134

100793682

100778287

101248129

101249294

101255534

4337820

4325735

103641392

103635893

103836734

103858756

100261361

100233054

18101833

18094407

18101828

25494071

25488176

25494069

123191203

123191196

123425335

123425326

107888927

107908417

107916074

8086363

102598676

102592316

102579979

102612067

100824498

100824990

107778339

107783701

142179439

The preparation time of this page was 0.4 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	sbi	sot	cit	bdi	nta	bna
Paralog	1	1	3	2	1	2	2	2	3	3	2	2	3	2	3	2	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_17g734400v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_17g734400v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**