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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107931573   DNA-directed RNA polymerases I and III subunit rpac1 
 ghi-r.1   107922651   DNA-directed RNA polymerases I and III subunit RPAC1 
 ghi-r.1   107920955   DNA-directed RNA polymerases I and III subunit RPAC1 
 ath-u.5   RPAC43   RNA polymerase I subunit 43 
 ath-u.5   ATRPAC42   DNA-directed RNA polymerase family protein 
 bra-r.6   103829922   DNA-directed RNA polymerases I and III subunit rpac1 
 bna-r.1   106452553   DNA-directed RNA polymerases I and III subunit RPAC1 
 bna-r.1   125579279   DNA-directed RNA polymerases I and III subunit rpac1-like 
 bna-r.1   106449894   DNA-directed RNA polymerases I and III subunit rpac1-like 
 cit-r.1   102620633   uncharacterized LOC102620633 
 gma-u.5   100818494   DNA-directed RNA polymerases I and III subunit RPAC1 
 gma-u.5   100786622   DNA-directed RNA polymerases I and III subunit RPAC1-like 
 vvi-u.5   100248046   uncharacterized LOC100248046 
 ppo-u.5   7485118   uncharacterized LOC7485118 
 mtr-u.5   11444317   DNA-directed RNA polymerases I and III subunit RPAC1 
 sly-u.5   101248458   uncharacterized LOC101248458 
 sot-r.1   102598359   DNA-directed RNA polymerases I and III subunit RPAC1 
 nta-r.1   107787692   uncharacterized LOC107787692 
 nta-r.1   107775895   uncharacterized LOC107775895 
 osa-u.5   4332531   uncharacterized LOC4332531 
 zma-u.5   100191943   uncharacterized LOC100191943 
 tae-r.2   123053408   DNA-directed RNA polymerases I and III subunit rpac1 
 tae-r.2   123130481   DNA-directed RNA polymerases I and III subunit rpac1 
 tae-r.2   123181834   DNA-directed RNA polymerases I and III subunit rpac1 
 hvu-r.1   123440058   DNA-directed RNA polymerases I and III subunit rpac1 
 sbi-r.1   8071624   DNA-directed RNA polymerases I and III subunit rpac1 
 bdi-r.1   100828268   DNA-directed RNA polymerases I and III subunit rpac1 
 cre-r.1   CHLRE_07g313302v5   uncharacterized protein 

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Top 50 coexpressed genes to 107931573 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107931573 (ghi-r.1 coexpression data)

CoexMap"107931729"


ghiLOC107931729 | Entrez gene ID : 107931729    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 1 3 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (617 genes)  IEA  
GO CC
GO:0005736 [list] [network] RNA polymerase I complex  (62 genes)  IEA  
GO:0005666 [list] [network] RNA polymerase III complex  (77 genes)  IEA  
GO MF
GO:0046983 [list] [network] protein dimerization activity  (1206 genes)  IEA  
Protein XP_040948496.1 [sequence] [blastp]
Subcellular
localization
wolf
extr 6,  chlo 1,  nucl 1,  cyto 1,  E.R. 1,  cyto_nucl 1,  chlo_mito 1,  cyto_E.R. 1  (predict for XP_040948496.1)
Subcellular
localization
TargetP
scret 3  (predict for XP_040948496.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107931573
ghi-r.1
for
107922651
ghi-r.1
for
107920955
ath-u.5
for
RPAC43
ath-u.5
for
ATRPAC42
bra-r.6
for
103829922
bna-r.1
for
106452553
bna-r.1
for
125579279
bna-r.1
for
106449894
cit-r.1
for
102620633
gma-u.5
for
100818494
gma-u.5
for
100786622
vvi-u.5
for
100248046
ppo-u.5
for
7485118
mtr-u.5
for
11444317
sly-u.5
for
101248458
sot-r.1
for
102598359
nta-r.1
for
107787692
nta-r.1
for
107775895
osa-u.5
for
4332531
zma-u.5
for
100191943
tae-r.2
for
123053408
tae-r.2
for
123130481
tae-r.2
for
123181834
hvu-r.1
for
123440058
sbi-r.1
for
8071624
bdi-r.1
for
100828268
cre-r.1
for
CHLRE_07g313302v5


Ortholog ID: 6738
Species ghi ghi ath ath bra bna bna bna cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC107920955 LOC107888162 RPAC43 ATRPAC42 LOC103829922 LOC106452553 LOC125579279 LOC106366576 LOC102620633 LOC100818494 LOC100786622 LOC100248046 LOC7485118 LOC11444317 LOC101248458 LOC102598359 LOC107787692 LOC107775895 LOC4332531 LOC100191943 LOC123053408 LOC123130481 LOC123181834 LOC123440058 LOC8071624 LOC100828268 CHLRE_07g313302v5
Function* DNA-directed RNA polymerases I and III subunit RPAC1 DNA-directed RNA polymerases I and III subunit RPAC1 RNA polymerase I subunit 43 DNA-directed RNA polymerase family protein DNA-directed RNA polymerases I and III subunit rpac1 DNA-directed RNA polymerases I and III subunit RPAC1 DNA-directed RNA polymerases I and III subunit rpac1-like DNA-directed RNA polymerases I and III subunit RPAC1 uncharacterized LOC102620633 DNA-directed RNA polymerases I and III subunit RPAC1 DNA-directed RNA polymerases I and III subunit RPAC1-like uncharacterized LOC100248046 uncharacterized LOC7485118 DNA-directed RNA polymerases I and III subunit RPAC1 uncharacterized LOC101248458 DNA-directed RNA polymerases I and III subunit RPAC1 uncharacterized LOC107787692 uncharacterized LOC107775895 uncharacterized LOC4332531 uncharacterized LOC100191943 DNA-directed RNA polymerases I and III subunit rpac1 DNA-directed RNA polymerases I and III subunit rpac1 DNA-directed RNA polymerases I and III subunit rpac1 DNA-directed RNA polymerases I and III subunit rpac1 DNA-directed RNA polymerases I and III subunit rpac1 DNA-directed RNA polymerases I and III subunit rpac1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 4
ath03018 RNA degradation 2
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
ath03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03008 Ribosome biogenesis in eukaryotes 3
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 8
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 8
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 2
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03020 RNA polymerase 2
nta00040 Pentose and glucuronate interconversions 2
nta00052 Galactose metabolism 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03020 RNA polymerase 2
nta00040 Pentose and glucuronate interconversions 2
nta00052 Galactose metabolism 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 8
tae03020 RNA polymerase 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 8
tae03020 RNA polymerase 3
tae03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 4
bdi03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 5
cre03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107920955 107888162 842356 842377 103829922 106452553 125579279 106366576 102620633 100818494 100786622 100248046 7485118 11444317 101248458 102598359 107787692 107775895 4332531 100191943 123053408 123130481 123181834 123440058 8071624 100828268 66053942
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