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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107932805   RING-H2 finger protein ATL8 
 ghi-r.1   121204784   probable E3 ubiquitin-protein ligase RHA1A 
 ghi-r.1   107958810   brassinosteroid-responsive RING protein 1 
 ghi-r.1   107907062   brassinosteroid-responsive RING protein 1 
 ath-u.5   AT3G43430   RING/U-box superfamily protein 
 ath-u.5   AT5G20885   RING/U-box superfamily protein 
 bra-r.6   103856470   E3 ubiquitin-protein ligase RHA2B 
 bra-r.6   103851384   probable E3 ubiquitin-protein ligase RHA1A 
 bra-r.6   103845635   E3 ubiquitin-protein ligase RHA1B 
 bna-r.1   106434971   brassinosteroid-responsive RING protein 1-like 
 bna-r.1   106425724   brassinosteroid-responsive RING protein 1-like 
 bna-r.1   106385155   brassinosteroid-responsive RING protein 1 
 cit-r.1   102630436   brassinosteroid-responsive RING protein 1 
 gma-u.5   111138523   RING/U-box superfamily protein 
 gma-u.5   100306203   RING/U-box superfamily protein 
 ppo-u.5   7492274   RING-H2 finger protein ATL38 
 mtr-u.5   11423860   RING-H2 finger protein ATL64 

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Top 50 coexpressed genes to 107932805 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107932805 (ghi-r.1 coexpression data)

CoexMap"107932805"


ghiLOC107932805 | Entrez gene ID : 107932805    
Species ghi ath bra bna cit gma ppo mtr sot zma cre sbi sly nta tae osa hvu vvi bdi
Paralog 4 2 3 3 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016567 [list] [network] protein ubiquitination  (962 genes)  IEA  
GO CC
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (513 genes)  IEA  
Protein XP_016720392.1 [sequence] [blastp]
Subcellular
localization
wolf
extr 5,  chlo 3,  vacu 2  (predict for XP_016720392.1)
Subcellular
localization
TargetP
scret 7,  other 3  (predict for XP_016720392.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107932805
ghi-r.1
for
121204784
ghi-r.1
for
107958810
ghi-r.1
for
107907062
ath-u.5
for
AT3G43430
ath-u.5
for
AT5G20885
bra-r.6
for
103856470
bra-r.6
for
103851384
bra-r.6
for
103845635
bna-r.1
for
106434971
bna-r.1
for
106425724
bna-r.1
for
106385155
cit-r.1
for
102630436
gma-u.5
for
111138523
gma-u.5
for
100306203
ppo-u.5
for
7492274
mtr-u.5
for
11423860


Ortholog ID: 12202
Species ghi ghi ghi ath ath bra bra bra bna bna bna cit gma gma ppo mtr
Symbol LOC107932805 LOC121204784 LOC107958810 AT3G43430 AT5G20885 LOC103856470 LOC103851384 LOC103845635 LOC106425724 LOC106385155 LOC106370431 LOC102630436 LOC111138523 LOC100306203 LOC7492274 LOC11423860
Function* RING-H2 finger protein ATL8 probable E3 ubiquitin-protein ligase RHA1A brassinosteroid-responsive RING protein 1 RING/U-box superfamily protein RING/U-box superfamily protein E3 ubiquitin-protein ligase RHA2B probable E3 ubiquitin-protein ligase RHA1A E3 ubiquitin-protein ligase RHA1B brassinosteroid-responsive RING protein 1-like brassinosteroid-responsive RING protein 1 E3 ubiquitin-protein ligase RHA1B brassinosteroid-responsive RING protein 1 RING/U-box superfamily protein RING/U-box superfamily protein RING-H2 finger protein ATL38 RING-H2 finger protein ATL64
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00030 Pentose phosphate pathway 4
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
ghi01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00030 Pentose phosphate pathway 6
ghi00710 Carbon fixation by Calvin cycle 6
ghi01200 Carbon metabolism 6
ghi01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 4
ath00030 Pentose phosphate pathway 3
ath00480 Glutathione metabolism 3
ath00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00270 Cysteine and methionine metabolism 3
bra01230 Biosynthesis of amino acids 3
bra00670 One carbon pool by folate 2
bra00999 Biosynthesis of various plant secondary metabolites 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 2
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 4
mtr04016 MAPK signaling pathway - plant 2
mtr04070 Phosphatidylinositol signaling system 2
mtr04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107932805 121204784 107958810 823423 832212 103856470 103851384 103845635 106425724 106385155 106370431 102630436 111138523 100306203 7492274 11423860
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