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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107941660   protein SHORT-ROOT 
 ghi-r.1   107914650   protein SHORT-ROOT 
 ghi-r.1   107922418   protein SHORT-ROOT 
 ghi-r.1   107932585   protein SHORT-ROOT 
 ath-u.5   SHR   GRAS family transcription factor 
 bra-r.6   103858567   protein SHORT-ROOT 
 bra-r.6   103862567   protein SHORT-ROOT 
 bna-r.1   111204710   protein SHORT-ROOT-like 
 bna-r.1   106432695   protein SHORT-ROOT 
 bna-r.1   106411098   protein SHORT-ROOT-like 
 cit-r.1   102623584   protein SHORT-ROOT 
 cit-r.1   102610900   protein SHORT-ROOT-like 
 gma-u.5   100797072   protein SHORT-ROOT 
 gma-u.5   100814082   protein SHORT-ROOT 
 gma-u.5   100818806   protein SHORT-ROOT 
 vvi-u.5   100854487   protein SHORT-ROOT 
 vvi-u.5   100263197   protein SHORT-ROOT 
 ppo-u.5   7491733   protein SHORT-ROOT 
 ppo-u.5   18103745   protein SHORT-ROOT 
 ppo-u.5   18106876   protein SHORT-ROOT 
 mtr-u.5   11434453   protein SHORT-ROOT 
 mtr-u.5   25487907   protein SHORT-ROOT 
 mtr-u.5   11409306   protein SHORT-ROOT 
 sly-u.5   101262675   protein SHORT-ROOT 
 sly-u.5   101249840   protein SHORT-ROOT 
 sot-r.1   102593647   protein SHORT-ROOT 
 sot-r.1   102598869   protein SHORT-ROOT-like 
 nta-r.1   107793941   protein SHORT-ROOT 
 nta-r.1   107822144   protein SHORT-ROOT-like 
 nta-r.1   107808399   protein SHORT-ROOT-like 
 osa-u.5   9269685   protein SHORT-ROOT 2 
 osa-u.5   4343753   protein SHORT-ROOT 1-like 
 zma-u.5   103636850   protein SHORT-ROOT 2-like 
 zma-u.5   103647790   protein SHORT-ROOT 1 
 zma-u.5   100383480   uncharacterized LOC100383480 
 tae-r.2   123188153   protein SHORT-ROOT 1 
 tae-r.2   123044387   protein SHORT-ROOT 1 
 hvu-r.1   123425503   protein SHORT-ROOT 1 
 sbi-r.1   8058376   protein SHORT-ROOT 1 
 sbi-r.1   8066249   protein SHORT-ROOT 2 
 bdi-r.1   100830802   protein SHORT-ROOT 1 

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Top 50 coexpressed genes to 107941660 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107941660 (ghi-r.1 coexpression data)

CoexMap"107941660"


ghiLOC107941660 | Entrez gene ID : 107941660    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 2 3 2 3 2 3 3 2 2 3 2 3 2 1 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009956 [list] [network] radial pattern formation  (9 genes)  IEA  
GO:0008356 [list] [network] asymmetric cell division  (18 genes)  IEA  
GO:0048366 [list] [network] leaf development  (30 genes)  IEA  
GO:0045930 [list] [network] negative regulation of mitotic cell cycle  (71 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (4318 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0043565 [list] [network] sequence-specific DNA binding  (1947 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (3140 genes)  IEA  
Protein XP_016730728.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 3,  cysk_nucl 3,  nucl_plas 3  (predict for XP_016730728.2)
Subcellular
localization
TargetP
other 8  (predict for XP_016730728.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107941660
ghi-r.1
for
107914650
ghi-r.1
for
107922418
ghi-r.1
for
107932585
ath-u.5
for
SHR
bra-r.6
for
103858567
bra-r.6
for
103862567
bna-r.1
for
111204710
bna-r.1
for
106432695
bna-r.1
for
106411098
cit-r.1
for
102623584
cit-r.1
for
102610900
gma-u.5
for
100797072
gma-u.5
for
100814082
gma-u.5
for
100818806
vvi-u.5
for
100854487
vvi-u.5
for
100263197
ppo-u.5
for
7491733
ppo-u.5
for
18103745
ppo-u.5
for
18106876
mtr-u.5
for
11434453
mtr-u.5
for
25487907
mtr-u.5
for
11409306
sly-u.5
for
101262675
sly-u.5
for
101249840
sot-r.1
for
102593647
sot-r.1
for
102598869
nta-r.1
for
107793941
nta-r.1
for
107822144
nta-r.1
for
107808399
osa-u.5
for
9269685
osa-u.5
for
4343753
zma-u.5
for
103636850
zma-u.5
for
103647790
zma-u.5
for
100383480
tae-r.2
for
123188153
tae-r.2
for
123044387
hvu-r.1
for
123425503
sbi-r.1
for
8058376
sbi-r.1
for
8066249
bdi-r.1
for
100830802


Ortholog ID: 3133
Species ghi ghi ghi ath bra bra bna bna bna cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sot sot nta nta nta osa osa zma zma zma tae tae hvu sbi sbi bdi
Symbol LOC107941660 LOC107914649 LOC107896922 SHR LOC103858567 LOC103862567 LOC106411098 LOC106361401 LOC106386234 LOC102623584 LOC102610900 LOC100814082 LOC100818806 LOC100778524 LOC100854487 LOC100263197 LOC7491733 LOC18103745 LOC18106876 LOC11434453 LOC25487907 LOC11409306 LOC101262675 LOC101249840 LOC102593647 LOC102598869 LOC107793941 LOC107822144 LOC107801134 LOC9269685 LOC4343753 LOC103636850 LOC103647790 LOC100383480 LOC123188153 LOC123044387 LOC123425503 LOC8058376 LOC8066249 LOC100830802
Function* protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT GRAS family transcription factor protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT-like protein SHORT-ROOT-like protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT-like protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT protein SHORT-ROOT-like protein SHORT-ROOT protein SHORT-ROOT-like protein SHORT-ROOT-like protein SHORT-ROOT 2 protein SHORT-ROOT 1-like protein SHORT-ROOT 2-like protein SHORT-ROOT 1 uncharacterized LOC100383480 protein SHORT-ROOT 1 protein SHORT-ROOT 1 protein SHORT-ROOT 1 protein SHORT-ROOT 1 protein SHORT-ROOT 2 protein SHORT-ROOT 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04145 Phagosome 2
cit04148 Efferocytosis 2
cit04517 IgSF CAM signaling 2
cit04518 Integrin signaling 2
cit04620 Toll-like receptor signaling pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00943 Isoflavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma02010 ABC transporters 2
gma04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr04141 Protein processing in endoplasmic reticulum 3
mtr04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00380 Tryptophan metabolism 2
nta04075 Plant hormone signal transduction 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 3
nta04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00380 Tryptophan metabolism 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04016 MAPK signaling pathway - plant 2
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107941660 107914649 107896922 829919 103858567 103862567 106411098 106361401 106386234 102623584 102610900 100814082 100818806 100778524 100854487 100263197 7491733 18103745 18106876 11434453 25487907 11409306 101262675 101249840 102593647 102598869 107793941 107822144 107801134 9269685 4343753 103636850 103647790 100383480 123188153 123044387 123425503 8058376 8066249 100830802
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