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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107942613   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 ghi-r.1   107937661   BRCA1-associated RING domain protein 1 
 ghi-r.1   107937648   BRCA1-associated RING domain protein 1 
 ghi-r.1   107959787   BRCA1-associated RING domain protein 1 
 ath-u.5   BRCA1   breast cancer susceptibility1 
 ath-u.5   BARD1   breast cancer associated RING 1 
 bra-r.6   103834209   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 bra-r.6   103843674   BRCA1-associated RING domain protein 1 
 bra-r.6   103858702   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 bna-r.1   106360996   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 cit-r.1   102622461   BRCA1-associated RING domain protein 1 
 cit-r.1   102626843   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 gma-u.5   100306420   BRCA1 carboxy-terminal domain-containing protein 
 gma-u.5   100784883   BRCA1-associated RING domain protein 1 
 gma-u.5   100789372   BRCT domain-containing protein 
 vvi-u.5   100253255   BRCA1-associated RING domain protein 1 
 ppo-u.5   7474513   BRCA1-associated RING domain protein 1 
 ppo-u.5   7470812   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 mtr-u.5   11444771   BRCA1-associated RING domain protein 1 
 mtr-u.5   25486045   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 sly-u.5   101249153   BRCA1-associated RING domain protein 1-like 
 sly-u.5   101256694   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 sot-r.1   102579131   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 sot-r.1   102589099   BRCA1-associated RING domain protein 1 
 sot-r.1   102585833   BRCA1-associated RING domain protein 1-like 
 nta-r.1   107821036   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 nta-r.1   107822351   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 nta-r.1   107773243   BRCA1-associated RING domain protein 1-like 
 osa-u.5   107276010   BRCA1-associated RING domain protein 1 
 osa-u.5   4339293   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 osa-u.5   4336384   BRCA1-associated RING domain protein 1 
 zma-u.5   103630583   uncharacterized LOC103630583 
 zma-u.5   100281664   ATBRCA1 
 tae-r.2   123054018   BRCA1-associated RING domain protein 1 
 tae-r.2   123048868   BRCA1-associated RING domain protein 1 
 tae-r.2   123046135   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 hvu-r.1   123427227   BRCA1-associated RING domain protein 1 
 sbi-r.1   8064471   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 sbi-r.1   8077022   BRCA1-associated RING domain protein 1 
 sbi-r.1   8067490   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 bdi-r.1   100835205   BRCA1-associated RING domain protein 1 
 bdi-r.1   100842545   protein BREAST CANCER SUSCEPTIBILITY 1 homolog 
 bdi-r.1   100842826   BRCA1-associated RING domain protein 1 
 cre-r.1   CHLRE_01g018650v5   uncharacterized protein 
 cre-r.1   CHLRE_03g174600v5   uncharacterized protein 
 cre-r.1   CHLRE_07g334650v5   uncharacterized protein 

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Top 50 coexpressed genes to 107942613 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107942613 (ghi-r.1 coexpression data)

CoexMap"107942613"


ghiLOC107942613 | Entrez gene ID : 107942613    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 3 1 2 3 1 2 2 2 3 3 3 2 3 1 3 3 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03440 [list] [network] Homologous recombination (106 genes)
GO BP
GO:0045717 [list] [network] negative regulation of fatty acid biosynthetic process  (13 genes)  IEA  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (150 genes)  IEA  
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (349 genes)  IEA  
GO CC
GO:0031436 [list] [network] BRCA1-BARD1 complex  (7 genes)  IEA  
GO:0070531 [list] [network] BRCA1-A complex  (13 genes)  IEA  
GO:0005886 [list] [network] plasma membrane  (2553 genes)  IEA  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (871 genes)  IEA  
Protein XP_016731798.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_016731798.2)
Subcellular
localization
TargetP
other 9  (predict for XP_016731798.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107942613
ghi-r.1
for
107937661
ghi-r.1
for
107937648
ghi-r.1
for
107959787
ath-u.5
for
BRCA1
ath-u.5
for
BARD1
bra-r.6
for
103834209
bra-r.6
for
103843674
bra-r.6
for
103858702
bna-r.1
for
106360996
cit-r.1
for
102622461
cit-r.1
for
102626843
gma-u.5
for
100306420
gma-u.5
for
100784883
gma-u.5
for
100789372
vvi-u.5
for
100253255
ppo-u.5
for
7474513
ppo-u.5
for
7470812
mtr-u.5
for
11444771
mtr-u.5
for
25486045
sly-u.5
for
101249153
sly-u.5
for
101256694
sot-r.1
for
102579131
sot-r.1
for
102589099
sot-r.1
for
102585833
nta-r.1
for
107821036
nta-r.1
for
107822351
nta-r.1
for
107773243
osa-u.5
for
107276010
osa-u.5
for
4339293
osa-u.5
for
4336384
zma-u.5
for
103630583
zma-u.5
for
100281664
tae-r.2
for
123054018
tae-r.2
for
123048868
tae-r.2
for
123046135
hvu-r.1
for
123427227
sbi-r.1
for
8064471
sbi-r.1
for
8077022
sbi-r.1
for
8067490
bdi-r.1
for
100835205
bdi-r.1
for
100842545
bdi-r.1
for
100842826
cre-r.1
for
CHLRE_01g018650v5
cre-r.1
for
CHLRE_03g174600v5
cre-r.1
for
CHLRE_07g334650v5


Ortholog ID: 1586
Species ghi ghi ghi ath ath bra bra bra bna bna cit cit gma gma gma vvi ppo ppo mtr mtr sly sly sot sot sot nta nta nta osa osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi bdi cre cre cre
Symbol LOC107937648 LOC107944716 LOC107920972 BRCA1 BARD1 LOC103834209 LOC103843674 LOC103858702 LOC106360996 LOC106389897 LOC102622461 LOC102626843 LOC100784883 LOC100789372 LOC100804958 LOC100253255 LOC7474513 LOC7470812 LOC11444771 LOC25486045 LOC101249153 LOC101256776 LOC102579131 LOC102589099 LOC102585833 LOC107822351 LOC107773243 LOC107812739 LOC107276010 LOC4339293 LOC4336384 LOC103630583 LOC100281664 LOC123040853 LOC123139632 LOC123427227 LOC123416662 LOC8064471 LOC8067490 LOC100835205 LOC100842545 LOC100842826 CHLRE_03g174600v5 CHLRE_07g334650v5 CHLRE_16g672350v5
Function* BRCA1-associated RING domain protein 1 uncharacterized LOC107944716 protein BREAST CANCER SUSCEPTIBILITY 1 homolog breast cancer susceptibility1 breast cancer associated RING 1 protein BREAST CANCER SUSCEPTIBILITY 1 homolog BRCA1-associated RING domain protein 1 protein BREAST CANCER SUSCEPTIBILITY 1 homolog protein BREAST CANCER SUSCEPTIBILITY 1 homolog protein BREAST CANCER SUSCEPTIBILITY 1 homolog BRCA1-associated RING domain protein 1 protein BREAST CANCER SUSCEPTIBILITY 1 homolog BRCA1-associated RING domain protein 1 BRCT domain-containing protein BRCT domain-containing protein BRCA1-associated RING domain protein 1 BRCA1-associated RING domain protein 1 protein BREAST CANCER SUSCEPTIBILITY 1 homolog BRCA1-associated RING domain protein 1 protein BREAST CANCER SUSCEPTIBILITY 1 homolog BRCA1-associated RING domain protein 1-like BRCA1-associated RING domain protein 1 protein BREAST CANCER SUSCEPTIBILITY 1 homolog BRCA1-associated RING domain protein 1 BRCA1-associated RING domain protein 1-like protein BREAST CANCER SUSCEPTIBILITY 1 homolog BRCA1-associated RING domain protein 1-like BRCA1-associated RING domain protein 1 BRCA1-associated RING domain protein 1 protein BREAST CANCER SUSCEPTIBILITY 1 homolog BRCA1-associated RING domain protein 1 uncharacterized LOC103630583 ATBRCA1 BRCA1-associated RING domain protein 1 protein BREAST CANCER SUSCEPTIBILITY 1 homolog BRCA1-associated RING domain protein 1 protein BREAST CANCER SUSCEPTIBILITY 1 homolog protein BREAST CANCER SUSCEPTIBILITY 1 homolog protein BREAST CANCER SUSCEPTIBILITY 1 homolog BRCA1-associated RING domain protein 1 protein BREAST CANCER SUSCEPTIBILITY 1 homolog BRCA1-associated RING domain protein 1 uncharacterized protein uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
ghi04814 Motor proteins 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 7
ath03030 DNA replication 5
ath03420 Nucleotide excision repair 4
ath03460 Fanconi anemia pathway 4
ath03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 4
ath03430 Mismatch repair 3
ath03440 Homologous recombination 3
ath03420 Nucleotide excision repair 2
ath03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04814 Motor proteins 3
bra03082 ATP-dependent chromatin remodeling 2
bra03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 5
bra03420 Nucleotide excision repair 3
bra03430 Mismatch repair 3
bra03440 Homologous recombination 3
bra00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 7
bra03440 Homologous recombination 4
bra03420 Nucleotide excision repair 3
bra03430 Mismatch repair 3
bra03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00240 Pyrimidine metabolism 8
bna01232 Nucleotide metabolism 8
bna03440 Homologous recombination 5
bna03460 Fanconi anemia pathway 4
bna00230 Purine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00240 Pyrimidine metabolism 8
bna01232 Nucleotide metabolism 8
bna03440 Homologous recombination 5
bna03460 Fanconi anemia pathway 5
bna00230 Purine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03440 Homologous recombination 2
cit00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03410 Base excision repair 4
gma00240 Pyrimidine metabolism 3
gma01232 Nucleotide metabolism 3
gma03030 DNA replication 3
gma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03440 Homologous recombination 3
gma00240 Pyrimidine metabolism 3
gma01232 Nucleotide metabolism 3
gma03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00240 Pyrimidine metabolism 4
gma01232 Nucleotide metabolism 4
gma03030 DNA replication 3
gma03440 Homologous recombination 3
gma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03420 Nucleotide excision repair 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 10
ppo03440 Homologous recombination 4
ppo03410 Base excision repair 3
ppo03420 Nucleotide excision repair 3
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 8
ppo00230 Purine metabolism 3
ppo00240 Pyrimidine metabolism 3
ppo00480 Glutathione metabolism 3
ppo01232 Nucleotide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00230 Purine metabolism 5
mtr00240 Pyrimidine metabolism 5
mtr00480 Glutathione metabolism 5
mtr01232 Nucleotide metabolism 5
mtr03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
sly00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 4
sot03410 Base excision repair 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03440 Homologous recombination 2
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta03440 Homologous recombination 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 6
nta03440 Homologous recombination 4
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 6
nta03030 DNA replication 3
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 7
osa03440 Homologous recombination 2
osa03082 ATP-dependent chromatin remodeling 2
osa03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 7
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 6
zma03430 Mismatch repair 3
zma03420 Nucleotide excision repair 2
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04016 MAPK signaling pathway - plant 2
hvu03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 11
sbi03440 Homologous recombination 5
sbi03460 Fanconi anemia pathway 3
sbi00270 Cysteine and methionine metabolism 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 7
sbi03440 Homologous recombination 3
sbi03430 Mismatch repair 3
sbi03420 Nucleotide excision repair 2
sbi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 6
bdi00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 6
bdi03440 Homologous recombination 3
bdi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 5
cre03060 Protein export 3
cre04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 8
cre03420 Nucleotide excision repair 2
cre03430 Mismatch repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107937648 107944716 107920972 827854 839329 103834209 103843674 103858702 106360996 106389897 102622461 102626843 100784883 100789372 100804958 100253255 7474513 7470812 11444771 25486045 101249153 101256776 102579131 102589099 102585833 107822351 107773243 107812739 107276010 4339293 4336384 103630583 100281664 123040853 123139632 123427227 123416662 8064471 8067490 100835205 100842545 100842826 5728877 5725710 5721402
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