ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107945622	4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic
ath-u.5	DHDPS2	dihydrodipicolinate synthase
ath-u.5	DHDPS1	dihydrodipicolinate synthase 1
gma-u.5	100788930	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic
gma-u.5	100806626	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic
gma-u.5	DHPS1	dihydrodipicolinate synthase
vvi-u.5	100262665	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic
ppo-u.5	7461723	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic
ppo-u.5	7488907	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic
mtr-u.5	25484755	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic
mtr-u.5	25501006	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic
mtr-u.5	25501008	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic
sly-u.5	101250089	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like
sly-u.5	101250558	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic
osa-u.5	4335317	4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic
zma-u.5	542379	dihydrodipicolinate synthase 1
zma-u.5	100282239	dihydrodipicolinate synthase 2

Top 50 coexpressed genes to 107945622 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107945622 (ghi-r.1 coexpression data)

CoexMap"107945622"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi00261 [list] [network] Monobactam biosynthesis (24 genes)

ghi00300 [list] [network] Lysine biosynthesis (28 genes)

ghi01230 [list] [network] Biosynthesis of amino acids (568 genes)

GO BP

GO:0009089 [list] [network] lysine biosynthetic process via diaminopimelate

(25 genes)

IEA

GO CC

GO MF

GO:0008840 [list] [network] 4-hydroxy-tetrahydrodipicolinate synthase activity

(4 genes)

IEA

Protein

XP_016735184.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 4, plas 1, pero 1, cysk 1, cysk_plas 1

(predict for XP_016735184.1)

Subcellular
localization
TargetP

mito 6, chlo 3

(predict for XP_016735184.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107945622	ath-u.5 for DHDPS2	ath-u.5 for DHDPS1	gma-u.5 for 100788930	gma-u.5 for 100806626	gma-u.5 for DHPS1	vvi-u.5 for 100262665	ppo-u.5 for 7461723	ppo-u.5 for 7488907	mtr-u.5 for 25484755	mtr-u.5 for 25501006	mtr-u.5 for 25501008	sly-u.5 for 101250089	sly-u.5 for 101250558	osa-u.5 for 4335317	zma-u.5 for 542379	zma-u.5 for 100282239

Ortholog

Ortholog ID: 3566

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC121210886

LOC107945622

DHDPS1

DHDPS2

Function^*

4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic

4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic

dihydrodipicolinate synthase 1

dihydrodipicolinate synthase

4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic

4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic

4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic-like

4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic

4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like

4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic

4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like

4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic

4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like

4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic

4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic

dihydrodipicolinate synthase 2

dihydrodipicolinate synthase 1

4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic-like

4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic

4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic

4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic

4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic

4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01230	Biosynthesis of amino acids	6
ghi00261	Monobactam biosynthesis	4
ghi00300	Lysine biosynthesis	4
ghi03010	Ribosome	3
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01230	Biosynthesis of amino acids	6
ghi00261	Monobactam biosynthesis	4
ghi00300	Lysine biosynthesis	4
ghi03010	Ribosome	3
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01230	Biosynthesis of amino acids	10
ath00300	Lysine biosynthesis	5
ath01210	2-Oxocarboxylic acid metabolism	4
ath00261	Monobactam biosynthesis	3
ath00290	Valine, leucine and isoleucine biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	6
ath00300	Lysine biosynthesis	3
ath01230	Biosynthesis of amino acids	3
ath00261	Monobactam biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00261	Monobactam biosynthesis	3
bra00300	Lysine biosynthesis	3
bra01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	3
bra00261	Monobactam biosynthesis	2
bra00300	Lysine biosynthesis	2
bra01230	Biosynthesis of amino acids	2
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	4
bna00261	Monobactam biosynthesis	3
bna00300	Lysine biosynthesis	3
bna01230	Biosynthesis of amino acids	3
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	4
bna00261	Monobactam biosynthesis	3
bna00300	Lysine biosynthesis	3
bna01230	Biosynthesis of amino acids	3
bna00740	Riboflavin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	7
cit00190	Oxidative phosphorylation	2
cit03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01230	Biosynthesis of amino acids	5
gma01210	2-Oxocarboxylic acid metabolism	3
gma03013	Nucleocytoplasmic transport	2
gma00290	Valine, leucine and isoleucine biosynthesis	2
gma00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	7
ppo00970	Aminoacyl-tRNA biosynthesis	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00261	Monobactam biosynthesis	2
mtr00300	Lysine biosynthesis	2
mtr01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00261	Monobactam biosynthesis	2
mtr00300	Lysine biosynthesis	2
mtr01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	9
sly03013	Nucleocytoplasmic transport	3
sly00261	Monobactam biosynthesis	2
sly00300	Lysine biosynthesis	2
sly01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	8
sly03010	Ribosome	4
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	17
sot00261	Monobactam biosynthesis	2
sot00300	Lysine biosynthesis	2
sot01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	8
sot01230	Biosynthesis of amino acids	3
sot00230	Purine metabolism	2
sot03082	ATP-dependent chromatin remodeling	2
sot00261	Monobactam biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	9
nta00261	Monobactam biosynthesis	2
nta00300	Lysine biosynthesis	2
nta01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	8
nta00261	Monobactam biosynthesis	2
nta00300	Lysine biosynthesis	2
nta01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01230	Biosynthesis of amino acids	8
osa00300	Lysine biosynthesis	3
osa00250	Alanine, aspartate and glutamate metabolism	3
osa00230	Purine metabolism	3
osa01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	3
zma04626	Plant-pathogen interaction	2
zma00561	Glycerolipid metabolism	2
zma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00670	One carbon pool by folate	3
tae00240	Pyrimidine metabolism	2
tae00790	Folate biosynthesis	2
tae01232	Nucleotide metabolism	2
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00561	Glycerolipid metabolism	2
tae04626	Plant-pathogen interaction	2
tae00261	Monobactam biosynthesis	2
tae00300	Lysine biosynthesis	2
tae01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	4
hvu00300	Lysine biosynthesis	3
hvu00261	Monobactam biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01230	Biosynthesis of amino acids	4
sbi00261	Monobactam biosynthesis	2
sbi00300	Lysine biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01230	Biosynthesis of amino acids	3
sbi00261	Monobactam biosynthesis	2
sbi00300	Lysine biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01230	Biosynthesis of amino acids	3
bdi03420	Nucleotide excision repair	2
bdi03010	Ribosome	2
bdi00261	Monobactam biosynthesis	2
bdi00300	Lysine biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	2
bdi04382	Cornified envelope formation	2
bdi00261	Monobactam biosynthesis	2
bdi00300	Lysine biosynthesis	2
bdi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01230	Biosynthesis of amino acids	4
cre00230	Purine metabolism	3
cre01232	Nucleotide metabolism	3
cre03008	Ribosome biogenesis in eukaryotes	2

Expression

Expression pattern

Entrez Gene ID^*

121210886

107945622

825259

819152

103866894

103862855

111213954

106452154

102610554

100788930

100806626

100262665

7461723

7488907

25501006

25501008

101250089

101250558

102582563

102581931

107786069

107823498

4335317

100282239

542379

123054920

543217

123428135

123427448

8060419

8058459

100827466

100834273

5725512

The preparation time of this page was 0.1 [sec].


Species	ghi	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	sot	nta	cre	tae
Paralog	1	2	3	1	2	3	2	1	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107945622 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107945622 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**