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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107958246   transcription factor ILR3 
 ath-u.5   bHLH34   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   bHLH104   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   ILR3   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 gma-u.5   100813088   transcription factor ILR3-like 
 gma-u.5   100808803   transcription factor ILR3 
 gma-u.5   100806838   transcription factor bHLH115-like 
 vvi-u.5   100245935   transcription factor ILR3 
 vvi-u.5   100251326   transcription factor bHLH104 
 vvi-u.5   100251621   transcription factor ILR3 
 ppo-u.5   7497040   transcription factor ILR3 
 ppo-u.5   18095890   transcription factor ILR3 
 ppo-u.5   18101598   transcription factor bHLH104 
 mtr-u.5   11409489   transcription factor ILR3 
 mtr-u.5   11419849   transcription factor bHLH104 
 mtr-u.5   11445675   transcription factor ILR3 
 sly-u.5   101264073   transcription factor ILR3-like 
 sly-u.5   101247632   transcription factor ILR3 
 sly-u.5   101248331   transcription factor bHLH104 
 osa-u.5   4328080   transcription factor ILR3 
 osa-u.5   4344627   transcription factor ILR3 
 osa-u.5   4343509   transcription factor ILR3 
 zma-u.5   100282509   uncharacterized LOC100282509 
 zma-u.5   100193990   uncharacterized LOC100193990 
 zma-u.5   103639990   transcription factor ILR3 

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Top 50 coexpressed genes to 107958246 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107958246 (ghi-r.1 coexpression data)

CoexMap"107958246"


ghiLOC107958246 | Entrez gene ID : 107958246    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006879 [list] [network] intracellular iron ion homeostasis  (38 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (4318 genes)  IEA  
GO CC
GO MF
GO:0046983 [list] [network] protein dimerization activity  (1206 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (3140 genes)  IEA  
Protein XP_016749436.1 [sequence] [blastp]
XP_040969582.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  nucl_plas 4,  chlo 2,  plas 1,  chlo_mito 1  (predict for XP_016749436.1)
nucl 6,  nucl_plas 4,  plas 1,  chlo 1  (predict for XP_040969582.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016749436.1)
other 7  (predict for XP_040969582.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107958246
ath-u.5
for
bHLH34
ath-u.5
for
bHLH104
ath-u.5
for
ILR3
gma-u.5
for
100813088
gma-u.5
for
100808803
gma-u.5
for
100806838
vvi-u.5
for
100245935
vvi-u.5
for
100251326
vvi-u.5
for
100251621
ppo-u.5
for
7497040
ppo-u.5
for
18095890
ppo-u.5
for
18101598
mtr-u.5
for
11409489
mtr-u.5
for
11419849
mtr-u.5
for
11445675
sly-u.5
for
101264073
sly-u.5
for
101247632
sly-u.5
for
101248331
osa-u.5
for
4328080
osa-u.5
for
4344627
osa-u.5
for
4343509
zma-u.5
for
100282509
zma-u.5
for
100193990
zma-u.5
for
103639990


Ortholog ID: 595
Species ghi ghi ath ath bra bra bna bna cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC107939864 LOC107942996 bHLH115 bHLH34 LOC103828768 LOC103844925 LOC106449668 LOC106390538 LOC102623026 LOC127899974 LOC100813088 LOC100803143 LOC100258884 LOC100264856 LOC18095890 LOC7492418 LOC11409489 LOC11445675 LOC101248331 LOC101247632 LOC102584888 LOC102584960 LOC107816467 LOC107780376 LOC4338978 LOC4344627 LOC100280093 LOC118476893 LOC123158275 LOC123044620 LOC123425811 LOC123407909 LOC8081711 LOC8072534 LOC100822537 LOC100832841 CHLRE_05g241636v5
Function* transcription factor ILR3 transcription factor ILR3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor bHLH34 transcription factor ILR3 transcription factor bHLH34 transcription factor ILR3 transcription factor ILR3-like transcription factor ILR3-like transcription factor ILR3-like transcription factor bHLH115 transcription factor ILR3 transcription factor bHLH104 transcription factor ILR3 transcription factor bHLH104 transcription factor ILR3 transcription factor ILR3 transcription factor bHLH104 transcription factor ILR3 transcription factor ILR3-like transcription factor ILR3-like transcription factor ILR3 transcription factor ILR3 transcription factor ILR3 transcription factor ILR3 uncharacterized LOC100280093 transcription factor ILR3 transcription factor ILR3 transcription factor ILR3 transcription factor ILR3-like transcription factor ILR3-like transcription factor ILR3 transcription factor ILR3 transcription factor ILR3 transcription factor ILR3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 6
ghi04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 6
ghi04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 4
ath00760 Nicotinate and nicotinamide metabolism 2
ath00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00910 Nitrogen metabolism 2
bra00750 Vitamin B6 metabolism 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00010 Glycolysis / Gluconeogenesis 4
gma00071 Fatty acid degradation 3
gma00620 Pyruvate metabolism 3
gma00053 Ascorbate and aldarate metabolism 2
gma00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 2
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 3
mtr00020 Citrate cycle (TCA cycle) 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 7
mtr00020 Citrate cycle (TCA cycle) 4
mtr01200 Carbon metabolism 4
mtr03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 6
nta00260 Glycine, serine and threonine metabolism 4
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 7
nta03250 Viral life cycle - HIV-1 2
nta03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00910 Nitrogen metabolism 5
osa01310 Nitrogen cycle 5
osa00195 Photosynthesis 3
osa00480 Glutathione metabolism 3
osa00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00020 Citrate cycle (TCA cycle) 4
tae01200 Carbon metabolism 4
tae01210 2-Oxocarboxylic acid metabolism 4
tae00010 Glycolysis / Gluconeogenesis 3
tae00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 4
bdi03013 Nucleocytoplasmic transport 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04081 Hormone signaling 2
cre00860 Porphyrin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107939864 107942996 841529 821899 103828768 103844925 106449668 106390538 102623026 127899974 100813088 100803143 100258884 100264856 18095890 7492418 11409489 11445675 101248331 101247632 102584888 102584960 107816467 107780376 4338978 4344627 100280093 118476893 123158275 123044620 123425811 123407909 8081711 8072534 100822537 100832841 66053434
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