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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107958979   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 ghi-r.1   107906817   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 ath-u.5   PGR3   proton gradient regulation 3 
 bra-r.6   103862089   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 bra-r.6   103854849   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 bna-r.1   106423362   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 bna-r.1   106420467   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 bna-r.1   106375392   pentatricopeptide repeat-containing protein At4g31850, chloroplastic-like 
 cit-r.1   102631179   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 gma-u.5   100778358   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 vvi-u.5   100247529   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 mtr-u.5   11431942   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 sly-u.5   101253773   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 sot-r.1   102586286   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 nta-r.1   107795365   uncharacterized LOC107795365 
 nta-r.1   107805778   uncharacterized LOC107805778 
 osa-u.5   4348654   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 zma-u.5   103639062   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 tae-r.2   123096052   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 tae-r.2   123091044   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 tae-r.2   123086933   pentatricopeptide repeat-containing protein At4g31850, chloroplastic-like 
 hvu-r.1   123447713   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 sbi-r.1   8066277   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 
 bdi-r.1   100836501   pentatricopeptide repeat-containing protein At4g31850, chloroplastic 

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Top 50 coexpressed genes to 107958979 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107958979 (ghi-r.1 coexpression data)

CoexMap"107958979"


ghiLOC107958979 | Entrez gene ID : 107958979    
Species ghi ath bra bna cit gma vvi mtr sly sot nta osa zma tae hvu sbi bdi cre ppo
Paralog 2 1 2 3 1 1 1 1 1 1 2 1 1 3 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_040968929.1 [sequence] [blastp]
XP_040968930.1 [sequence] [blastp]
XP_040968931.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_040968929.1)
chlo 9  (predict for XP_040968930.1)
chlo 9  (predict for XP_040968931.1)
Subcellular
localization
TargetP
scret 4  (predict for XP_040968929.1)
scret 4  (predict for XP_040968930.1)
scret 4  (predict for XP_040968931.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107958979
ghi-r.1
for
107906817
ath-u.5
for
PGR3
bra-r.6
for
103862089
bra-r.6
for
103854849
bna-r.1
for
106423362
bna-r.1
for
106420467
bna-r.1
for
106375392
cit-r.1
for
102631179
gma-u.5
for
100778358
vvi-u.5
for
100247529
mtr-u.5
for
11431942
sly-u.5
for
101253773
sot-r.1
for
102586286
nta-r.1
for
107795365
nta-r.1
for
107805778
osa-u.5
for
4348654
zma-u.5
for
103639062
tae-r.2
for
123096052
tae-r.2
for
123091044
tae-r.2
for
123086933
hvu-r.1
for
123447713
sbi-r.1
for
8066277
bdi-r.1
for
100836501


Ortholog ID: 9618
Species ghi ghi ath bra bra bna bna bna cit gma vvi mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC107958979 LOC107906817 PGR3 LOC103862089 LOC103854849 LOC106423362 LOC106375392 LOC106372436 LOC102631179 LOC100778358 LOC100247529 LOC11431942 LOC101253773 LOC102586286 LOC107795365 LOC107805778 LOC4348654 LOC103639062 LOC123096052 LOC123091044 LOC123086933 LOC123447713 LOC8066277 LOC100836501
Function* pentatricopeptide repeat-containing protein At4g31850, chloroplastic pentatricopeptide repeat-containing protein At4g31850, chloroplastic proton gradient regulation 3 pentatricopeptide repeat-containing protein At4g31850, chloroplastic pentatricopeptide repeat-containing protein At4g31850, chloroplastic pentatricopeptide repeat-containing protein At4g31850, chloroplastic pentatricopeptide repeat-containing protein At4g31850, chloroplastic-like pentatricopeptide repeat-containing protein At4g31850, chloroplastic-like pentatricopeptide repeat-containing protein At4g31850, chloroplastic pentatricopeptide repeat-containing protein At4g31850, chloroplastic pentatricopeptide repeat-containing protein At4g31850, chloroplastic pentatricopeptide repeat-containing protein At4g31850, chloroplastic pentatricopeptide repeat-containing protein At4g31850, chloroplastic pentatricopeptide repeat-containing protein At4g31850, chloroplastic uncharacterized LOC107795365 uncharacterized LOC107805778 pentatricopeptide repeat-containing protein At4g31850, chloroplastic pentatricopeptide repeat-containing protein At4g31850, chloroplastic pentatricopeptide repeat-containing protein At4g31850, chloroplastic pentatricopeptide repeat-containing protein At4g31850, chloroplastic pentatricopeptide repeat-containing protein At4g31850, chloroplastic-like pentatricopeptide repeat-containing protein At4g31850, chloroplastic pentatricopeptide repeat-containing protein At4g31850, chloroplastic pentatricopeptide repeat-containing protein At4g31850, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 3
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
hvu00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107958979 107906817 829314 103862089 103854849 106423362 106375392 106372436 102631179 100778358 100247529 11431942 101253773 102586286 107795365 107805778 4348654 103639062 123096052 123091044 123086933 123447713 8066277 100836501
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