ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	107959087	uncharacterized LOC107959087
ghi-r.1	107904115	uncharacterized LOC107904115
ghi-r.1	107906159	uncharacterized LOC107906159
ghi-r.1	107960087	uncharacterized LOC107960087
ath-u.5	AT5G59830	DNA-binding protein
bra-r.6	103851542	uncharacterized LOC103851542
bna-r.1	106357797	uncharacterized LOC106357797
bna-r.1	106385494	uncharacterized LOC106385494
cit-r.1	102624362	uncharacterized LOC102624362
gma-u.5	100819317	uncharacterized LOC100819317
gma-u.5	100802229	uncharacterized LOC100802229
gma-u.5	100787520	uncharacterized LOC100787520
vvi-u.5	100260456	uncharacterized LOC100260456
ppo-u.5	7457924	uncharacterized LOC7457924
ppo-u.5	7485723	uncharacterized LOC7485723
ppo-u.5	7489275	uncharacterized LOC7489275
mtr-u.5	11438298	uncharacterized LOC11438298
mtr-u.5	11410178	uncharacterized LOC11410178
sly-u.5	101254101	uncharacterized LOC101254101
sot-r.1	102583417	uncharacterized LOC102583417
nta-r.1	107826048	uncharacterized LOC107826048
nta-r.1	107808368	uncharacterized LOC107808368
nta-r.1	142170804	uncharacterized LOC142170804

Annotation

functional annotation

KEGG

GO BP

GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II

(349 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(7681 genes)

IEA

GO MF

GO:0042393 [list] [network] histone binding	(158 genes)	IEA
GO:0003682 [list] [network] chromatin binding	(366 genes)	IEA
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding	(678 genes)	IEA

Protein

XP_016750554.2 [sequence] [blastp]
XP_040969158.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 3, cysk_nucl 3, nucl_plas 3	(predict for XP_016750554.2)
nucl 6, cyto 3, cysk_nucl 3, nucl_plas 3	(predict for XP_040969158.1)

Subcellular
localization
TargetP

other 7	(predict for XP_016750554.2)
other 7	(predict for XP_040969158.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107959087	ghi-r.1 for 107904115	ghi-r.1 for 107906159	ghi-r.1 for 107960087	ath-u.5 for AT5G59830	bra-r.6 for 103851542	bna-r.1 for 106357797	bna-r.1 for 106385494	cit-r.1 for 102624362	gma-u.5 for 100819317	gma-u.5 for 100802229	gma-u.5 for 100787520	vvi-u.5 for 100260456	ppo-u.5 for 7457924	ppo-u.5 for 7485723	ppo-u.5 for 7489275	mtr-u.5 for 11438298	mtr-u.5 for 11410178	sly-u.5 for 101254101	sot-r.1 for 102583417	nta-r.1 for 107826048	nta-r.1 for 107808368	nta-r.1 for 142170804

Ortholog

Ortholog ID: 9182

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

Symbol

Function^*

uncharacterized LOC107959087

uncharacterized LOC107906159

uncharacterized LOC107960087

DNA-binding protein

uncharacterized LOC103851542

uncharacterized LOC106357797

uncharacterized LOC106385494

uncharacterized LOC102624362

uncharacterized LOC100819317

uncharacterized LOC100787520

uncharacterized LOC100782217

uncharacterized LOC100260456

uncharacterized LOC7457924

uncharacterized LOC7485723

uncharacterized LOC7489593

uncharacterized LOC11438298

uncharacterized LOC11410178

uncharacterized LOC101254101

uncharacterized LOC102583417

uncharacterized LOC107826048

uncharacterized LOC107808368

uncharacterized LOC142170804

Coexmap

Please wait a moment.

Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	2
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	2
ppo04136	Autophagy - other	2
ppo04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	4
nta04075	Plant hormone signal transduction	2
nta04145	Phagosome	2
nta04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta04075	Plant hormone signal transduction	2
nta04144	Endocytosis	2
nta04145	Phagosome	2
nta04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2
nta04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

107959087

107906159

107960087

836104

103851542

106357797

106385494

102624362

100819317

100787520

100782217

100260456

7457924

7485723

7489593

11438298

11410178

101254101

102583417

107826048

107808368

142170804

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107959087 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107959087 (ghi-r.1 coexpression data)


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	bdi	osa	tae	zma	cre	sbi	hvu
Paralog	4	1	1	2	1	3	1	3	2	1	1	3	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107959087 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107959087 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**