ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	107962025	protein INVOLVED IN DE NOVO 2
ath-u.5	IDN2	XH/XS domain-containing protein
ath-u.5	FDM2	XH/XS domain-containing protein
gma-u.5	100790829	factor of DNA methylation 1
gma-u.5	100798940	factor of DNA methylation 1
gma-u.5	102665742	kinesin-like protein KIF20B
vvi-u.5	100260350	protein INVOLVED IN DE NOVO 2
vvi-u.5	100257549	factor of DNA methylation 1
vvi-u.5	100252420	factor of DNA methylation 1
ppo-u.5	7458138	protein INVOLVED IN DE NOVO 2
ppo-u.5	18102687	factor of DNA methylation 4
ppo-u.5	7478299	factor of DNA methylation 1
mtr-u.5	11440090	factor of DNA methylation 1
mtr-u.5	11425283	factor of DNA methylation 1
mtr-u.5	25489298	protein INVOLVED IN DE NOVO 2
sly-u.5	101256002	protein INVOLVED IN DE NOVO 2
sly-u.5	101244470	factor of DNA methylation 1
osa-u.5	4329065	factor of DNA methylation 1
osa-u.5	4326595	protein INVOLVED IN DE NOVO 2
osa-u.5	4325982	protein INVOLVED IN DE NOVO 2
zma-u.5	100383007	putative XH domain family protein
zma-u.5	100279850	uncharacterized LOC100279850
zma-u.5	100382110	putative XH domain family protein

Annotation

functional annotation

KEGG

GO BP

GO:0080188 [list] [network] gene silencing by siRNA-directed DNA methylation

(35 genes)

IEA

GO CC

GO MF

Protein

XP_016753728.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 7, nucl 1, chlo 1, cysk 1, nucl_plas 1

(predict for XP_016753728.2)

Subcellular
localization
TargetP

other 9

(predict for XP_016753728.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107962025	ath-u.5 for IDN2	ath-u.5 for FDM2	gma-u.5 for 100790829	gma-u.5 for 100798940	gma-u.5 for 102665742	vvi-u.5 for 100260350	vvi-u.5 for 100257549	vvi-u.5 for 100252420	ppo-u.5 for 7458138	ppo-u.5 for 18102687	ppo-u.5 for 7478299	mtr-u.5 for 11440090	mtr-u.5 for 11425283	mtr-u.5 for 25489298	sly-u.5 for 101256002	sly-u.5 for 101244470	osa-u.5 for 4329065	osa-u.5 for 4326595	osa-u.5 for 4325982	zma-u.5 for 100383007	zma-u.5 for 100279850	zma-u.5 for 100382110

Ortholog

Ortholog ID: 752

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

LOC107942441

LOC107900468

FDM1

FDM2

Function^*

factor of DNA methylation 4

protein INVOLVED IN DE NOVO 2

XH/XS domain-containing protein

factor of DNA methylation 1-like

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 1

factor of DNA methylation 1-like

factor of DNA methylation 1

factor of DNA methylation 4

kinesin-like protein KIF20B

factor of DNA methylation 1

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 1

factor of DNA methylation 4

factor of DNA methylation 1

factor of DNA methylation 1-like

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 1

factor of DNA methylation 4

protein INVOLVED IN DE NOVO 2

factor of DNA methylation 1

putative XH domain family protein

uncharacterized LOC100279850

factor of DNA methylation 1

factor of DNA methylation 1-like

protein INVOLVED IN DE NOVO 2-like

factor of DNA methylation 1

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03440	Homologous recombination	2
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00380	Tryptophan metabolism	2
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	6
nta00010	Glycolysis / Gluconeogenesis	2
nta00030	Pentose phosphate pathway	2
nta00052	Galactose metabolism	2
nta00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	3
osa03008	Ribosome biogenesis in eukaryotes	2
osa03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03020	RNA polymerase	2
hvu03030	DNA replication	2
hvu03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03020	RNA polymerase	3

Expression

Expression pattern

Entrez Gene ID^*

107942441

107900468

838161

828016

103842874

103873124

106414893

106346801

102629124

102620954

102665742

100790829

100252420

100257549

7478299

7458138

11425283

25487893

101244470

102599221

102585012

107806269

107818569

4325982

4329065

100383007

100279850

123061513

123443878

123413430

8070401

100845608

100845391

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107962025 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107962025 (ghi-r.1 coexpression data)


Species	ghi	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	sot	nta	cre	tae
Paralog	1	2	3	3	3	3	2	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107962025 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107962025 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**