ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107962128	laccase-5
ghi-r.1	107900545	laccase-5
ghi-r.1	107900544	laccase-5
ghi-r.1	107927043	laccase-13
ath-u.5	LAC3	laccase 3
ath-u.5	LAC5	laccase 5
ath-u.5	LAC12	laccase 12
bra-r.6	103847086	laccase-13
bra-r.6	103867971	laccase-3
bra-r.6	103866955	laccase-5
bna-r.1	125575709	laccase-3-like
bna-r.1	125585382	laccase-3-like
bna-r.1	106454895	laccase-3
cit-r.1	102609228	laccase-12-like
cit-r.1	102622903	laccase-13-like
cit-r.1	102616340	laccase-13
gma-u.5	547704	diphenol oxidase laccase
gma-u.5	100806093	laccase-3
gma-u.5	100797749	laccase-5
vvi-u.5	100262045	laccase-12
ppo-u.5	7462100	laccase-12
ppo-u.5	7462101	laccase-12
ppo-u.5	7464613	laccase-12
mtr-u.5	11410085	laccase-3
mtr-u.5	11411380	laccase-12
mtr-u.5	11434534	laccase-5
sly-u.5	101262425	laccase-5-like
sly-u.5	101251392	laccase-3-like
sot-r.1	102597748	laccase-3-like
sot-r.1	102605547	laccase-12-like
nta-r.1	107783942	laccase-12-like
nta-r.1	107780240	laccase-3-like
osa-u.5	4327522	laccase-3-like
osa-u.5	4349566	putative laccase-17
osa-u.5	4351276	laccase-23-like
zma-u.5	103654275	laccase-23
zma-u.5	100282094	L-ascorbate oxidase
zma-u.5	100502492	putative laccase family protein
tae-r.2	123120487	putative laccase-17
tae-r.2	123079615	laccase-3
tae-r.2	123111393	putative laccase-17
hvu-r.1	123440584	laccase-3
hvu-r.1	123397646	putative laccase-17
sbi-r.1	8085414	laccase-3
bdi-r.1	100845885	laccase-3
bdi-r.1	100835168	laccase-23

Top 50 coexpressed genes to 107962128 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107962128 (ghi-r.1 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

laccase-5

KEGG

GO BP

GO:0046274 [list] [network] lignin catabolic process

(87 genes)

IEA

GO CC

GO:0048046 [list] [network] apoplast

(189 genes)

IEA

GO MF

GO:0052716 [list] [network] hydroquinone:oxygen oxidoreductase activity	(87 genes)	IEA
GO:0005507 [list] [network] copper ion binding	(202 genes)	IEA

Protein

XP_016753861.2 [sequence] [blastp]

Subcellular
localization
wolf

vacu 4, chlo 4, nucl 1

(predict for XP_016753861.2)

Subcellular
localization
TargetP

scret 9

(predict for XP_016753861.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107962128	ghi-r.1 for 107900545	ghi-r.1 for 107900544	ghi-r.1 for 107927043	ath-u.5 for LAC3	ath-u.5 for LAC5	ath-u.5 for LAC12	bra-r.6 for 103847086	bra-r.6 for 103867971	bra-r.6 for 103866955	bna-r.1 for 125575709	bna-r.1 for 125585382	bna-r.1 for 106454895	cit-r.1 for 102609228	cit-r.1 for 102622903	cit-r.1 for 102616340	gma-u.5 for 547704	gma-u.5 for 100806093	gma-u.5 for 100797749	vvi-u.5 for 100262045	ppo-u.5 for 7462100	ppo-u.5 for 7462101	ppo-u.5 for 7464613	mtr-u.5 for 11410085	mtr-u.5 for 11411380	mtr-u.5 for 11434534	sly-u.5 for 101262425	sly-u.5 for 101251392	sot-r.1 for 102597748	sot-r.1 for 102605547	nta-r.1 for 107783942	nta-r.1 for 107780240	osa-u.5 for 4327522	osa-u.5 for 4349566	osa-u.5 for 4351276	zma-u.5 for 103654275	zma-u.5 for 100282094	zma-u.5 for 100502492	tae-r.2 for 123120487	tae-r.2 for 123079615	tae-r.2 for 123111393	hvu-r.1 for 123440584	hvu-r.1 for 123397646	sbi-r.1 for 8085414	bdi-r.1 for 100845885	bdi-r.1 for 100835168

Please wait a moment.

Ortholog

Ortholog ID: 825

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

LOC107962128

LOC107927043

LOC107962127

LAC3

LAC5

LAC13

Function^*

laccase-5

laccase-13

laccase-5

laccase 3

laccase 5

laccase 13

laccase-3

laccase-5

laccase-12

laccase-13

laccase-12-like

laccase-12

laccase-12-like

laccase-13-like

laccase-13

laccase-5

laccase-3

laccase-12

laccase-3

laccase-12

laccase-5

laccase-5-like

laccase-3-like

laccase-12

laccase-3-like

laccase-3

laccase-12-like

laccase-3-like

laccase-12

laccase-3-like

putative laccase-17

laccase-23-like

laccase-23

L-ascorbate oxidase

putative laccase family protein

putative laccase-17

laccase-3

putative laccase-17

laccase-3

laccase-23

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00360	Phenylalanine metabolism	2
ghi00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00073	Cutin, suberine and wax biosynthesis	4
ath04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath02010	ABC transporters	4
ath04981	Folate transport and metabolism	4
ath00561	Glycerolipid metabolism	2
ath00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00460	Cyanoamino acid metabolism	2
bra00500	Starch and sucrose metabolism	2
bra00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00073	Cutin, suberine and wax biosynthesis	4
bra00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00600	Sphingolipid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	4
gma02010	ABC transporters	2
gma04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00561	Glycerolipid metabolism	2
ppo00564	Glycerophospholipid metabolism	2
ppo02010	ABC transporters	2
ppo04981	Folate transport and metabolism	2
ppo04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00520	Amino sugar and nucleotide sugar metabolism	2
mtr01250	Biosynthesis of nucleotide sugars	2
mtr00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00073	Cutin, suberine and wax biosynthesis	2
sly00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00360	Phenylalanine metabolism	2
sly00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	3
sot00071	Fatty acid degradation	2
sot00073	Cutin, suberine and wax biosynthesis	2
sot02010	ABC transporters	2
sot04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	2
sot00941	Flavonoid biosynthesis	2
sot00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2
sot00073	Cutin, suberine and wax biosynthesis	2
sot04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00073	Cutin, suberine and wax biosynthesis	3
nta00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00040	Pentose and glucuronate interconversions	3
nta02010	ABC transporters	2
nta04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	2
zma00561	Glycerolipid metabolism	2
zma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	3
tae00053	Ascorbate and aldarate metabolism	2
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae02010	ABC transporters	3
tae04981	Folate transport and metabolism	3
tae00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00073	Cutin, suberine and wax biosynthesis	3
tae02010	ABC transporters	3
tae04981	Folate transport and metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00073	Cutin, suberine and wax biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	2
sbi00073	Cutin, suberine and wax biosynthesis	2
sbi02010	ABC transporters	2
sbi04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00940	Phenylpropanoid biosynthesis	2
bdi00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00940	Phenylpropanoid biosynthesis	4

Expression

Expression pattern

Entrez Gene ID^*

107962128

107927043

107962127

817571

818630

830604

103867971

103866955

103850581

106446093

106419221

106444570

102609228

102622903

102616340

100796956

100786719

100785427

100262045

7464613

7464614

7497422

11410085

11411380

11434534

101262425

101251392

101262618

102597748

102590317

102578240

107783942

107812162

107823893

4327522

4349566

4351276

103654275

100282094

100502492

123120487

123079615

123071258

123440584

123397646

8085414

100845885

100835168

The preparation time of this page was 0.3 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	3	1	3	3	2	2	2	3	3	3	2	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107962128 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107962128 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**