ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	11408278	glutamate decarboxylase 1
mtr-r.5	11408278	glutamate decarboxylase 1
mtr-m.5	11408278	glutamate decarboxylase 1
mtr-u.5	25496687	glutamate decarboxylase
mtr-u.5	120577330	glutamate decarboxylase 4
mtr-u.5	11433639	glutamate decarboxylase 1
gma-u.5	100796475	glutamate decarboxylase
gma-u.5	100796533	glutamate decarboxylase
gma-u.5	100787167	glutamate decarboxylase 1
ppo-u.5	7494518	glutamate decarboxylase 1
ppo-u.5	7485189	glutamate decarboxylase
ppo-u.5	7457832	glutamate decarboxylase 4
ath-u.5	GAD	glutamate decarboxylase
ath-u.5	GAD4	glutamate decarboxylase 4
vvi-u.5	100266215	glutamate decarboxylase 1
vvi-u.5	100265999	glutamate decarboxylase
vvi-u.5	100261008	glutamate decarboxylase 4
sly-u.5	GAD3	glutamate decarboxylase isoform3
sly-u.5	GAD2	glutamate decarboxylase isoform2
sly-u.5	101251185	glutamate decarboxylase-like
osa-u.5	4345787	glutamate decarboxylase 1
osa-u.5	4332184	glutamate decarboxylase 1
osa-u.5	4333932	glutamate decarboxylase 1
zma-u.5	100273302	Pyridoxal phosphate (PLP)-dependent transferase superfamily protein
zma-u.5	100191549	uncharacterized LOC100191549
zma-u.5	100284551	uncharacterized LOC100284551

Top 50 coexpressed genes to 11408278 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 11408278 (mtr-u.5 coexpression data)

CoexMap"11408278"

[Cytoscape]

Annotation

functional annotation

KEGG

mtr00250 [list] [network] Alanine, aspartate and glutamate metabolism (52 genes)

mtr00410 [list] [network] beta-Alanine metabolism (49 genes)

mtr00430 [list] [network] Taurine and hypotaurine metabolism (15 genes)

mtr00650 [list] [network] Butanoate metabolism (24 genes)

GO BP

GO:0006538 [list] [network] L-glutamate catabolic process

(8 genes)

IEA

GO CC

GO:0005829 [list] [network] cytosol

(784 genes)

IEA

GO MF

GO:0004351 [list] [network] glutamate decarboxylase activity	(4 genes)	IEA
GO:0030170 [list] [network] pyridoxal phosphate binding	(97 genes)	IEA

Protein

XP_003600653.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 8, chlo 2

(predict for XP_003600653.2)

Subcellular
localization
TargetP

other 4, chlo 3

(predict for XP_003600653.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11408278	mtr-r.5 for 11408278	mtr-m.5 for 11408278	mtr-u.5 for 25496687	mtr-u.5 for 120577330	mtr-u.5 for 11433639	gma-u.5 for 100796475	gma-u.5 for 100796533	gma-u.5 for 100787167	ppo-u.5 for 7494518	ppo-u.5 for 7485189	ppo-u.5 for 7457832	ath-u.5 for GAD	ath-u.5 for GAD4	vvi-u.5 for 100266215	vvi-u.5 for 100265999	vvi-u.5 for 100261008	sly-u.5 for GAD3	sly-u.5 for GAD2	sly-u.5 for 101251185	osa-u.5 for 4345787	osa-u.5 for 4332184	osa-u.5 for 4333932	zma-u.5 for 100273302	zma-u.5 for 100191549	zma-u.5 for 100284551

Ortholog

Ortholog ID: 523

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

GAD

GAD2

GAD3

Function^*

glutamate decarboxylase 4

glutamate decarboxylase

glutamate decarboxylase 2

glutamate decarboxylase

glutamate decarboxylase 4

glutamate decarboxylase

glutamate decarboxylase 4

glutamate decarboxylase 2

glutamate decarboxylase 1

glutamate decarboxylase-like

glutamate decarboxylase 5-like

glutamate decarboxylase isoform2

glutamate decarboxylase isoform3

glutamate decarboxylase

glutamate decarboxylase-like

glutamate decarboxylase 4-like

glutamate decarboxylase-like

glutamate decarboxylase

glutamate decarboxylase 4

uncharacterized LOC100191549

uncharacterized LOC100284551

glutamate decarboxylase

glutamate decarboxylase 1-like

glutamate decarboxylase-like

glutamate decarboxylase

glutamate decarboxylase 1

glutamate decarboxylase

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01240	Biosynthesis of cofactors	2
mtr00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00250	Alanine, aspartate and glutamate metabolism	2
gma00410	beta-Alanine metabolism	2
gma00430	Taurine and hypotaurine metabolism	2
gma00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00250	Alanine, aspartate and glutamate metabolism	2
gma00410	beta-Alanine metabolism	2
gma00430	Taurine and hypotaurine metabolism	2
gma00650	Butanoate metabolism	2
gma00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath02010	ABC transporters	2
ath00940	Phenylpropanoid biosynthesis	2
ath00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00410	beta-Alanine metabolism	3
bra00190	Oxidative phosphorylation	3
bra04145	Phagosome	3
bra00330	Arginine and proline metabolism	2
bra00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2
vvi00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00250	Alanine, aspartate and glutamate metabolism	2
ghi00410	beta-Alanine metabolism	2
ghi00430	Taurine and hypotaurine metabolism	2
ghi00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00250	Alanine, aspartate and glutamate metabolism	6
ghi00410	beta-Alanine metabolism	6
ghi00430	Taurine and hypotaurine metabolism	6
ghi00650	Butanoate metabolism	6
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00250	Alanine, aspartate and glutamate metabolism	6
bna00650	Butanoate metabolism	6
bna00410	beta-Alanine metabolism	4
bna00430	Taurine and hypotaurine metabolism	4
bna00904	Diterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00250	Alanine, aspartate and glutamate metabolism	7
bna00410	beta-Alanine metabolism	7
bna00430	Taurine and hypotaurine metabolism	7
bna00650	Butanoate metabolism	7
bna00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04626	Plant-pathogen interaction	3
cit04120	Ubiquitin mediated proteolysis	3
cit04016	MAPK signaling pathway - plant	2
cit04075	Plant hormone signal transduction	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00250	Alanine, aspartate and glutamate metabolism	2
sot00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00250	Alanine, aspartate and glutamate metabolism	2
sot00410	beta-Alanine metabolism	2
sot00430	Taurine and hypotaurine metabolism	2
sot00650	Butanoate metabolism	2
sot00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00250	Alanine, aspartate and glutamate metabolism	2
nta00410	beta-Alanine metabolism	2
nta00430	Taurine and hypotaurine metabolism	2
nta00650	Butanoate metabolism	2
nta00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00250	Alanine, aspartate and glutamate metabolism	4
nta00410	beta-Alanine metabolism	4
nta00430	Taurine and hypotaurine metabolism	4
nta00650	Butanoate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00250	Alanine, aspartate and glutamate metabolism	2
zma00410	beta-Alanine metabolism	2
zma00430	Taurine and hypotaurine metabolism	2
zma00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00250	Alanine, aspartate and glutamate metabolism	2
zma00410	beta-Alanine metabolism	2
zma00430	Taurine and hypotaurine metabolism	2
zma00650	Butanoate metabolism	2
zma00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00250	Alanine, aspartate and glutamate metabolism	3
tae00410	beta-Alanine metabolism	3
tae00430	Taurine and hypotaurine metabolism	3
tae00650	Butanoate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00250	Alanine, aspartate and glutamate metabolism	3
tae00410	beta-Alanine metabolism	3
tae00430	Taurine and hypotaurine metabolism	3
tae00650	Butanoate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00250	Alanine, aspartate and glutamate metabolism	4
sbi00410	beta-Alanine metabolism	4
sbi00430	Taurine and hypotaurine metabolism	4
sbi00650	Butanoate metabolism	4
sbi00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00250	Alanine, aspartate and glutamate metabolism	4
sbi00410	beta-Alanine metabolism	4
sbi00430	Taurine and hypotaurine metabolism	4
sbi00650	Butanoate metabolism	4
sbi00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00250	Alanine, aspartate and glutamate metabolism	4
bdi00410	beta-Alanine metabolism	4
bdi00430	Taurine and hypotaurine metabolism	4
bdi00650	Butanoate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	4
bdi04626	Plant-pathogen interaction	2
bdi00564	Glycerophospholipid metabolism	2
bdi00565	Ether lipid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

120577330

25496687

100796475

100796533

7485189

831599

103831077

100265999

100261008

121224454

107948303

106426880

106387720

102612842

102611084

100147722

100147723

102581388

102594980

107819266

107804984

4335973

4335977

100191549

100284551

123075872

123066916

123447564

123441085

8065836

8063364

100831497

100827187

The preparation time of this page was 0.1 [sec].


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	6	3	3	2	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11408278 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11408278 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**