ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	11413934	glycine-rich RNA-binding protein GRP1A
mtr-r.5	11413934	glycine-rich RNA-binding protein GRP1A
mtr-m.5	11413934	glycine-rich RNA-binding protein GRP1A
mtr-u.5	11436305	glycine-rich RNA-binding protein 2, mitochondrial
mtr-u.5	11438930	glycine-rich RNA-binding protein 4, mitochondrial
mtr-u.5	11438254	small RNA-binding protein 11, chloroplastic
gma-u.5	100806292	glycine-rich RNA-binding protein GRP1A
gma-u.5	112998378	glycine-rich RNA-binding protein GRP1A-like
ppo-u.5	18105741	glycine-rich RNA-binding protein 3, mitochondrial
ppo-u.5	7485193	organelle RRM domain-containing protein 6, chloroplastic
ppo-u.5	7485722	small RNA-binding protein 11, chloroplastic
ath-u.5	CCR1	cold, circadian rhythm, and RNA binding 1
ath-u.5	AT1G73530	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	GR-RBP3	glycine-rich RNA-binding protein 3
bra-r.6	103860567	glycine-rich RNA-binding protein 3, mitochondrial
bra-r.6	103852896	glycine-rich RNA-binding protein 5, mitochondrial
bra-r.6	103842502	glycine-rich RNA-binding protein GRP1A
vvi-u.5	100854881	small RNA-binding protein 11, chloroplastic
vvi-u.5	100853676	glycine-rich RNA-binding protein GRP2A
vvi-u.5	100265324	glycine-rich RNA-binding protein 4, mitochondrial
ghi-r.1	107928749	glycine-rich RNA-binding protein GRP1A
ghi-r.1	107929711	small RNA-binding protein 11, chloroplastic
ghi-r.1	107934430	glycine-rich RNA-binding protein 2, mitochondrial
bna-r.1	106438434	small RNA-binding protein 11, chloroplastic-like
bna-r.1	106438956	glycine-rich RNA-binding protein 10
bna-r.1	106439949	glycine-rich RNA-binding protein 3, mitochondrial
cit-r.1	102625620	glycine-rich RNA-binding protein 2, mitochondrial
cit-r.1	102623019	glycine-rich RNA-binding protein 2, mitochondrial
sly-u.5	101266771	glycine-rich RNA-binding protein
sly-u.5	GRP1	glycine-rich RNA-binding protein-like
sly-u.5	101262262	glycine-rich RNA-binding protein
sot-r.1	102581514	glycine-rich RNA-binding protein 4, mitochondrial
sot-r.1	102579149	glycine-rich RNA-binding protein 2, mitochondrial-like
sot-r.1	102587142	glycine-rich RNA-binding protein
nta-r.1	107773500	organelle RRM domain-containing protein 6, chloroplastic
nta-r.1	107763441	uncharacterized LOC107763441
nta-r.1	107776960	glycine-rich RNA-binding protein 4, mitochondrial-like
osa-u.5	9269592	organelle RRM domain-containing protein 6, chloroplastic
osa-u.5	9269210	glycine-rich RNA-binding protein 4, mitochondrial
osa-u.5	4352868	glycine-rich RNA-binding protein 2
zma-u.5	100191295	Glycine-rich RNA-binding protein 3 mitochondrial
zma-u.5	100194217	responsive to abscisic acid15
zma-u.5	100191146	uncharacterized LOC100191146
tae-r.2	123080264	glycine-rich RNA-binding protein 2, mitochondrial
tae-r.2	123080303	glycine-rich RNA-binding protein 2, mitochondrial
hvu-r.1	123445181	glycine-rich RNA-binding protein 4, mitochondrial-like
hvu-r.1	123445204	glycine-rich RNA-binding protein 4, mitochondrial-like
sbi-r.1	8054129	glycine-rich RNA-binding protein
sbi-r.1	8064104	glycine-rich RNA-binding protein 2, mitochondrial
sbi-r.1	110434104	glycine-rich RNA-binding protein 4, mitochondrial-like
bdi-r.1	100840808	glycine-rich RNA-binding protein 4, mitochondrial
bdi-r.1	100842305	glycine-rich RNA-binding protein blt801
bdi-r.1	100841917	glycine-rich RNA-binding protein 3, mitochondrial
cre-r.1	CHLRE_02g079400v5	uncharacterized protein
cre-r.1	CHLRE_01g032300v5	uncharacterized protein
cre-r.1	CHLRE_13g602850v5	uncharacterized protein

Top 50 coexpressed genes to 11413934 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 11413934 (mtr-u.5 coexpression data)

CoexMap"11413934"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1400 genes)

IEA

Protein

XP_003606910.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, chlo 1, cyto 1, mito 1, extr 1, chlo_mito 1

(predict for XP_003606910.1)

Subcellular
localization
TargetP

other 6

(predict for XP_003606910.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11413934	mtr-r.5 for 11413934	mtr-m.5 for 11413934	mtr-u.5 for 11436305	mtr-u.5 for 11438930	mtr-u.5 for 11438254	gma-u.5 for 100806292	gma-u.5 for 112998378	ppo-u.5 for 18105741	ppo-u.5 for 7485193	ppo-u.5 for 7485722	ath-u.5 for CCR1	ath-u.5 for AT1G73530	ath-u.5 for GR-RBP3	bra-r.6 for 103860567	bra-r.6 for 103852896	bra-r.6 for 103842502	vvi-u.5 for 100854881	vvi-u.5 for 100853676	vvi-u.5 for 100265324	ghi-r.1 for 107928749	ghi-r.1 for 107929711	ghi-r.1 for 107934430	bna-r.1 for 106438434	bna-r.1 for 106438956	bna-r.1 for 106439949	cit-r.1 for 102625620	cit-r.1 for 102623019	sly-u.5 for 101266771	sly-u.5 for GRP1	sly-u.5 for 101262262	sot-r.1 for 102581514	sot-r.1 for 102579149	sot-r.1 for 102587142	nta-r.1 for 107773500	nta-r.1 for 107763441	nta-r.1 for 107776960	osa-u.5 for 9269592	osa-u.5 for 9269210	osa-u.5 for 4352868	zma-u.5 for 100191295	zma-u.5 for 100194217	zma-u.5 for 100191146	tae-r.2 for 123080264	tae-r.2 for 123080303	hvu-r.1 for 123445181	hvu-r.1 for 123445204	sbi-r.1 for 8054129	sbi-r.1 for 8064104	sbi-r.1 for 110434104	bdi-r.1 for 100840808	bdi-r.1 for 100842305	bdi-r.1 for 100841917	cre-r.1 for CHLRE_02g079400v5	cre-r.1 for CHLRE_01g032300v5	cre-r.1 for CHLRE_13g602850v5

Ortholog

Ortholog ID: 75

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

glycine-rich RNA-binding protein 2, mitochondrial

small RNA-binding protein 11, chloroplastic

organelle RRM domain-containing protein 6, chloroplastic

RNA recognition motif-containing protein

putative glycine-rich RNA binding protein

glycine-rich RNA-binding protein 2

organelle RRM domain-containing protein 6, chloroplastic

small RNA-binding protein 11, chloroplastic

RNA binding (RRM/RBD/RNP motifs) family protein

RNA-binding (RRM/RBD/RNP motifs) family protein

glycine-rich RNA-binding protein 10

organelle RRM domain-containing protein 6, chloroplastic

cold-inducible RNA-binding protein

small RNA-binding protein 11, chloroplastic

organelle RRM domain-containing protein 6, chloroplastic

small RNA-binding protein 11, chloroplastic

glycine-rich RNA-binding protein GRP1A

glycine-rich RNA-binding protein 3, mitochondrial

glycine-rich RNA-binding protein GRP1A

glycine-rich RNA-binding protein 2, mitochondrial

small RNA-binding protein 11, chloroplastic

organelle RRM domain-containing protein 2, mitochondrial-like

glycine-rich RNA-binding protein 4, mitochondrial

glycine-rich RNA-binding protein 2, mitochondrial

glycine-rich RNA-binding protein 4, mitochondrial

glycine-rich RNA-binding protein

glycine-rich RNA-binding protein 2, mitochondrial-like

glycine-rich RNA-binding protein 3, mitochondrial-like

glycine-rich RNA-binding protein-like

glycine-rich RNA-binding protein blt801

glycine-rich RNA-binding protein 2, mitochondrial

small RNA-binding protein 11, chloroplastic

Glycine-rich RNA-binding protein 3 mitochondrial

uncharacterized LOC542725

glycine-rich RNA-binding protein 7

glycine-rich RNA-binding protein 2, mitochondrial

glycine-rich RNA-binding protein

organelle RRM domain-containing protein 6, chloroplastic

glycine-rich RNA-binding protein blt801-like

loricrin-like

glycine-rich RNA-binding protein-like

glycine-rich RNA-binding protein 4, mitochondrial-like

small RNA-binding protein 11, chloroplastic

glycine-rich RNA-binding protein 4, mitochondrial

glycine-rich RNA-binding protein blt801

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	5
mtr03008	Ribosome biogenesis in eukaryotes	4
mtr03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr04141	Protein processing in endoplasmic reticulum	3
mtr03040	Spliceosome	3
mtr03420	Nucleotide excision repair	2
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3
ppo00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	6
ppo03040	Spliceosome	3
ppo00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	2
ath03040	Spliceosome	2
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	2
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00100	Steroid biosynthesis	4
ghi00940	Phenylpropanoid biosynthesis	3
ghi03013	Nucleocytoplasmic transport	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi00905	Brassinosteroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna04626	Plant-pathogen interaction	4
bna03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	8
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	9
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	6
sot03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	7
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	15
nta03008	Ribosome biogenesis in eukaryotes	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta03008	Ribosome biogenesis in eukaryotes	3
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	3
zma03010	Ribosome	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	15
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	5
tae03420	Nucleotide excision repair	5
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	4
hvu01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04145	Phagosome	3
sbi04517	IgSF CAM signaling	3
sbi04814	Motor proteins	3
sbi00520	Amino sugar and nucleotide sugar metabolism	2
sbi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	8
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01240	Biosynthesis of cofactors	2

Expression

Expression pattern

Entrez Gene ID^*

11436305

25499413

25497346

100796704

100305467

100777821

7485193

7485722

18109442

830508

819991

103835157

103852851

103851541

100854881

100263981

100246039

107896330

107960836

107952135

106439949

106365965

102623019

102608923

102627364

101257264

101254436

101245474

102581514

102587142

102587662

107759364

107787039

142161681

4352279

4343831

9266763

100191295

542725

100284207

123072018

123134221

123097872

123400027

123425384

123403078

110434104

8075292

8079176

100840808

100842305

5727272

5715399

5720095

The preparation time of this page was 0.2 [sec].


Species	mtr	gma	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	2	3	3	3	3	3	3	2	3	3	3	3	3	2	2	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11413934 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11413934 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**