ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	11414560	60S ribosomal protein L13a-4
mtr-r.5	11414560	60S ribosomal protein L13a-4
mtr-m.5	11414560	60S ribosomal protein L13a-4
mtr-u.5	25498414	60S ribosomal protein L13a-4
mtr-u.5	11429504	60S ribosomal protein L13a-4
gma-u.5	100784830	60S ribosomal protein L13a-4
gma-u.5	100499978	uncharacterized LOC100499978
gma-u.5	100808497	60S ribosomal protein L13a-4
ppo-u.5	18095225	60S ribosomal protein L13a-2
ppo-u.5	7461285	60S ribosomal protein L13a-4
ppo-u.5	7471141	60S ribosomal protein L13a-4
ath-u.5	AT3G07110	Ribosomal protein L13 family protein
ath-u.5	AT3G24830	Ribosomal protein L13 family protein
ath-u.5	AT4G13170	Ribosomal protein L13 family protein
vvi-u.5	104880402	large ribosomal subunit protein uL13y-like
vvi-u.5	100267451	60S ribosomal protein L13a-4-like
vvi-u.5	100261957	large ribosomal subunit protein uL13w
sly-u.5	101259442	large ribosomal subunit protein uL13w
sly-u.5	101263197	large ribosomal subunit protein uL13w
sly-u.5	101261552	large ribosomal subunit protein uL13w
osa-u.5	4342219	large ribosomal subunit protein uL13y
osa-u.5	4334154	large ribosomal subunit protein uL13w
zma-u.5	100191912	60S ribosomal protein L13a-like
zma-u.5	100283655	60S ribosomal protein L13a

Top 50 coexpressed genes to 11414560 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 11414560 (mtr-u.5 coexpression data)

CoexMap"11414560"

[Cytoscape]

Annotation

functional annotation

KEGG

mtr03010 [list] [network] Ribosome (1813 genes)

GO BP

GO:0017148 [list] [network] negative regulation of translation	(11 genes)	IEA
GO:0006412 [list] [network] translation	(552 genes)	IEA

GO CC

GO:0022625 [list] [network] cytosolic large ribosomal subunit	(89 genes)	IEA
GO:0005840 [list] [network] ribosome	(372 genes)	IEA

GO MF

GO:0003729 [list] [network] mRNA binding	(294 genes)	IEA
GO:0003735 [list] [network] structural constituent of ribosome	(369 genes)	IEA

Protein

XP_003589380.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 4, mito 2, cyto_nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2

(predict for XP_003589380.1)

Subcellular
localization
TargetP

other 4

(predict for XP_003589380.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11414560	mtr-r.5 for 11414560	mtr-m.5 for 11414560	mtr-u.5 for 25498414	mtr-u.5 for 11429504	gma-u.5 for 100784830	gma-u.5 for 100499978	gma-u.5 for 100808497	ppo-u.5 for 18095225	ppo-u.5 for 7461285	ppo-u.5 for 7471141	ath-u.5 for AT3G07110	ath-u.5 for AT3G24830	ath-u.5 for AT4G13170	vvi-u.5 for 104880402	vvi-u.5 for 100267451	vvi-u.5 for 100261957	sly-u.5 for 101259442	sly-u.5 for 101263197	sly-u.5 for 101261552	osa-u.5 for 4342219	osa-u.5 for 4334154	zma-u.5 for 100191912	zma-u.5 for 100283655

Ortholog

Ortholog ID: 1423

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

60S ribosomal protein L13a-4

uncharacterized LOC100499978

60S ribosomal protein L13a

60S ribosomal protein L13a-4

60S ribosomal protein L13a-2

Ribosomal protein L13 family protein

60S ribosomal protein L13a-2

large ribosomal subunit protein uL13y-like

large ribosomal subunit protein uL13w

60S ribosomal protein L13a-4

60S ribosomal protein L13a-2

60S ribosomal protein L13a-4

large ribosomal subunit protein uL13w

60S ribosomal protein L13a-4

large ribosomal subunit protein uL13w

large ribosomal subunit protein uL13y

60S ribosomal protein L13a

60S ribosomal protein L13a-like

60S ribosomal protein L13a-1

60S ribosomal protein L13a-4

60S ribosomal protein L13a-4-like

60S ribosomal protein L13a-4

ribosomal protein L13a

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	15
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	8
tae00260	Glycine, serine and threonine metabolism	3
tae00261	Monobactam biosynthesis	3
tae00270	Cysteine and methionine metabolism	3
tae00300	Lysine biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	20

Expression

Expression pattern

Entrez Gene ID^*

11414560

25498414

100499978

100813340

7471141

18095225

826931

822081

103860259

103838022

104880402

100261957

107942921

107955241

106434833

106428188

102616397

102617059

101263197

101259442

102586211

102587601

107824149

107831576

4334154

4342219

100283655

100191912

123188847

606336

123426360

123452290

8067456

8085922

100846133

100845636

5718550

The preparation time of this page was 0.1 [sec].


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	3	3	3	3	3	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11414560 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11414560 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**