ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	11430016	serine/arginine-rich-splicing factor SR34
mtr-r.5	11430016	serine/arginine-rich-splicing factor SR34
mtr-m.5	11430016	serine/arginine-rich-splicing factor SR34
mtr-u.5	11412312	serine/arginine-rich splicing factor SR30
mtr-u.5	11424462	serine/arginine-rich splicing factor SR30
mtr-u.5	11430819	serine/arginine-rich splicing factor SR34A
gma-u.5	100800653	serine/arginine-rich splicing factor SR34A
gma-u.5	100796900	pre-mRNA-splicing factor SF2-like
gma-u.5	100794282	serine/arginine-rich splicing factor SR30
ppo-u.5	7462688	serine/arginine-rich-splicing factor SR34
ppo-u.5	18098659	serine/arginine-rich splicing factor SR30
ppo-u.5	7481727	serine/arginine-rich splicing factor SR30
ath-u.5	SR34	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	SR34a	SER/ARG-rich protein 34A
ath-u.5	SR34b	RNA-binding (RRM/RBD/RNP motifs) family protein
bra-r.6	103873059	serine/arginine-rich splicing factor SR34A
bra-r.6	103871643	serine/arginine-rich splicing factor SR30
bra-r.6	103873488	serine/arginine-rich splicing factor SR34A
vvi-u.5	100255499	serine/arginine-rich-splicing factor SR34
vvi-u.5	100249315	serine/arginine-rich splicing factor SR30
vvi-u.5	100853709	serine/arginine-rich splicing factor SR34A
ghi-r.1	107904549	serine/arginine-rich splicing factor SR34A
ghi-r.1	107893639	serine/arginine-rich splicing factor SR30
ghi-r.1	107893284	serine/arginine-rich splicing factor SR30
bna-r.1	106347421	serine/arginine-rich splicing factor SR34A
bna-r.1	106418716	serine/arginine-rich splicing factor SR34A
bna-r.1	106412199	serine/arginine-rich splicing factor SR30
cit-r.1	102615989	serine/arginine-rich splicing factor SR30-like
cit-r.1	102626504	serine/arginine-rich-splicing factor SR34
cit-r.1	102611169	serine/arginine-rich splicing factor SR34A
sly-u.5	101247702	serine/arginine-rich splicing factor SR34A
sly-u.5	101247256	serine/arginine-rich-splicing factor SR34
sly-u.5	101257012	serine/arginine-rich splicing factor SR30
sot-r.1	102584103	serine/arginine-rich-splicing factor SR34-like
sot-r.1	102592958	serine/arginine-rich-splicing factor SR34-like
nta-r.1	107769333	serine/arginine-rich splicing factor SR34A
nta-r.1	107784603	serine/arginine-rich splicing factor SR30
nta-r.1	107784867	serine/arginine-rich splicing factor SR30
osa-u.5	4338552	serine/arginine-rich-splicing factor SR34
osa-u.5	4332806	serine/arginine-rich-splicing factor SR34
osa-u.5	4344256	serine/arginine-rich-splicing factor SR34
zma-u.5	100285019	uncharacterized LOC100285019
zma-u.5	100217203	uncharacterized LOC100217203
zma-u.5	100284054	pre-mRNA-splicing factor SF2
tae-r.2	123051591	serine/arginine-rich-splicing factor SR34
tae-r.2	123053202	serine/arginine-rich-splicing factor SR34
tae-r.2	123043736	serine/arginine-rich splicing factor SR30
hvu-r.1	123444166	serine/arginine-rich-splicing factor SR34-like
hvu-r.1	123448632	serine/arginine-rich splicing factor SR34A-like
hvu-r.1	123424755	serine/arginine-rich-splicing factor SR34-like
sbi-r.1	110430546	serine/arginine-rich-splicing factor SR34-like
sbi-r.1	8082304	serine/arginine-rich-splicing factor SR34
sbi-r.1	8079637	serine/arginine-rich splicing factor SR30
bdi-r.1	100842985	serine/arginine-rich-splicing factor SR34
bdi-r.1	100840113	serine/arginine-rich splicing factor SR30
bdi-r.1	100834993	serine/arginine-rich-splicing factor SR34
cre-r.1	CHLRE_01g026450v5	uncharacterized protein

Top 50 coexpressed genes to 11430016 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 11430016 (mtr-u.5 coexpression data)

CoexMap"11430016"

[Cytoscape]

Annotation

functional annotation

KEGG

mtr03040 [list] [network] Spliceosome (435 genes)

GO BP

GO CC

GO:0005634 [list] [network] nucleus	(2707 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(4514 genes)	IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(294 genes)

IEA

Protein

XP_024626359.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto 1, plas 1, cyto_plas 1

(predict for XP_024626359.1)

Subcellular
localization
TargetP

other 8, mito 5

(predict for XP_024626359.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11430016	mtr-r.5 for 11430016	mtr-m.5 for 11430016	mtr-u.5 for 11412312	mtr-u.5 for 11424462	mtr-u.5 for 11430819	gma-u.5 for 100800653	gma-u.5 for 100796900	gma-u.5 for 100794282	ppo-u.5 for 7462688	ppo-u.5 for 18098659	ppo-u.5 for 7481727	ath-u.5 for SR34	ath-u.5 for SR34a	ath-u.5 for SR34b	bra-r.6 for 103873059	bra-r.6 for 103871643	bra-r.6 for 103873488	vvi-u.5 for 100255499	vvi-u.5 for 100249315	vvi-u.5 for 100853709	ghi-r.1 for 107904549	ghi-r.1 for 107893639	ghi-r.1 for 107893284	bna-r.1 for 106347421	bna-r.1 for 106418716	bna-r.1 for 106412199	cit-r.1 for 102615989	cit-r.1 for 102626504	cit-r.1 for 102611169	sly-u.5 for 101247702	sly-u.5 for 101247256	sly-u.5 for 101257012	sot-r.1 for 102584103	sot-r.1 for 102592958	nta-r.1 for 107769333	nta-r.1 for 107784603	nta-r.1 for 107784867	osa-u.5 for 4338552	osa-u.5 for 4332806	osa-u.5 for 4344256	zma-u.5 for 100285019	zma-u.5 for 100217203	zma-u.5 for 100284054	tae-r.2 for 123051591	tae-r.2 for 123053202	tae-r.2 for 123043736	hvu-r.1 for 123444166	hvu-r.1 for 123448632	hvu-r.1 for 123424755	sbi-r.1 for 110430546	sbi-r.1 for 8082304	sbi-r.1 for 8079637	bdi-r.1 for 100842985	bdi-r.1 for 100840113	bdi-r.1 for 100834993	cre-r.1 for CHLRE_01g026450v5

Ortholog

Ortholog ID: 845

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SR34

SR34a

SR30

Function^*