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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SR34b   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-r.7   SR34b   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.9   SR34b   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-e.2   SR34b   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.bio   SR34b   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.hor   SR34b   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.lig   SR34b   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.str   SR34b   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.tis   SR34b   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   SR34a   SER/ARG-rich protein 34A 
 ath-u.5   SR30   SERINE-ARGININE PROTEIN 30 
 ath-u.5   SR34   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100786491   pre-mRNA-splicing factor SF2-like 
 gma-u.5   100789847   serine/arginine-rich-splicing factor SR34 
 gma-u.5   100794282   serine/arginine-rich splicing factor SR30 
 vvi-u.5   100249315   serine/arginine-rich splicing factor SR30 
 vvi-u.5   100853709   serine/arginine-rich splicing factor SR34A 
 vvi-u.5   100255499   serine/arginine-rich-splicing factor SR34 
 ppo-u.5   7462688   serine/arginine-rich-splicing factor SR34 
 ppo-u.5   7481727   serine/arginine-rich splicing factor SR30 
 ppo-u.5   18096446   serine/arginine-rich-splicing factor SR34 
 mtr-u.5   11412312   serine/arginine-rich splicing factor SR30 
 mtr-u.5   11430819   serine/arginine-rich splicing factor SR34A 
 mtr-u.5   11430016   serine/arginine-rich-splicing factor SR34 
 sly-u.5   101247702   serine/arginine-rich splicing factor SR34A 
 sly-u.5   101247256   serine/arginine-rich-splicing factor SR34 
 sly-u.5   101257012   serine/arginine-rich splicing factor SR30 
 osa-u.5   4344256   serine/arginine-rich-splicing factor SR34 
 osa-u.5   4338552   serine/arginine-rich-splicing factor SR34 
 osa-u.5   4332806   serine/arginine-rich-splicing factor SR34 
 zma-u.5   100285019   uncharacterized LOC100285019 
 zma-u.5   100217203   uncharacterized LOC100217203 
 zma-u.5   100284054   pre-mRNA-splicing factor SF2 

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Top 50 coexpressed genes to SR34b (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SR34b (ath-u.5 coexpression data)

CoexMap"828027"


athSR34b | Entrez gene ID : 828027      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 12 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001319845.1 [sequence] [blastp]
NP_001328194.1 [sequence] [blastp]
NP_001328195.1 [sequence] [blastp]
NP_849537.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  extr 1,  mito 1,  pero 1  (predict for NP_001319845.1)
nucl 8,  cyto 1  (predict for NP_001328194.1)
nucl 8,  cyto 1  (predict for NP_001328195.1)
cyto 10  (predict for NP_849537.1)
Subcellular
localization
TargetP
scret 6,  mito 4  (predict for NP_001319845.1)
other 7,  mito 5  (predict for NP_001328194.1)
other 7,  mito 5  (predict for NP_001328195.1)
other 7,  mito 5  (predict for NP_849537.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SR34b
ath-r.7
for
SR34b
ath-m.9
for
SR34b
ath-e.2
for
SR34b
ath-m.4.bio
for
SR34b
ath-m.4.hor
for
SR34b
ath-m.4.lig
for
SR34b
ath-m.4.str
for
SR34b
ath-m.4.tis
for
SR34b
ath-u.5
for
SR34a
ath-u.5
for
SR30
ath-u.5
for
SR34
gma-u.5
for
100786491
gma-u.5
for
100789847
gma-u.5
for
100794282
vvi-u.5
for
100249315
vvi-u.5
for
100853709
vvi-u.5
for
100255499
ppo-u.5
for
7462688
ppo-u.5
for
7481727
ppo-u.5
for
18096446
mtr-u.5
for
11412312
mtr-u.5
for
11430819
mtr-u.5
for
11430016
sly-u.5
for
101247702
sly-u.5
for
101247256
sly-u.5
for
101257012
osa-u.5
for
4344256
osa-u.5
for
4338552
osa-u.5
for
4332806
zma-u.5
for
100285019
zma-u.5
for
100217203
zma-u.5
for
100284054


Ortholog ID: 845
Species ath ath bra bra bna bna ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol SR34a SR30 LOC103873059 LOC103868210 LOC106347782 LOC106399770 LOC107919887 LOC107893284 LOC102615989 LOC102626504 LOC100786491 LOC100789847 LOC100255499 LOC100853709 LOC7462688 LOC18096446 LOC11412312 LOC11430016 LOC101247256 LOC101257012 LOC102584103 LOC102592958 LOC107799110 LOC107784603 LOC4332806 LOC4338552 LOC100285019 LOC100217203 LOC123078916 LOC123129630 LOC123448632 LOC123444166 LOC8079637 LOC110430546 LOC100834993 LOC100840113 CHLRE_01g026450v5
Function* SER/ARG-rich protein 34A SERINE-ARGININE PROTEIN 30 serine/arginine-rich splicing factor SR34A serine/arginine-rich-splicing factor SR34 serine/arginine-rich splicing factor SR34A serine/arginine-rich-splicing factor SR34 serine/arginine-rich splicing factor SR30 serine/arginine-rich splicing factor SR30 serine/arginine-rich splicing factor SR30-like serine/arginine-rich-splicing factor SR34 pre-mRNA-splicing factor SF2-like serine/arginine-rich-splicing factor SR34 serine/arginine-rich-splicing factor SR34 serine/arginine-rich splicing factor SR34A serine/arginine-rich-splicing factor SR34 serine/arginine-rich-splicing factor SR34 serine/arginine-rich splicing factor SR30 serine/arginine-rich-splicing factor SR34 serine/arginine-rich-splicing factor SR34 serine/arginine-rich splicing factor SR30 serine/arginine-rich-splicing factor SR34-like serine/arginine-rich-splicing factor SR34-like serine/arginine-rich splicing factor SR34A serine/arginine-rich splicing factor SR30 serine/arginine-rich-splicing factor SR34 serine/arginine-rich-splicing factor SR34 uncharacterized LOC100285019 uncharacterized LOC100217203 serine/arginine-rich-splicing factor SR34 serine/arginine-rich-splicing factor SR34 serine/arginine-rich splicing factor SR34A-like serine/arginine-rich-splicing factor SR34-like serine/arginine-rich splicing factor SR30 serine/arginine-rich-splicing factor SR34-like serine/arginine-rich-splicing factor SR34 serine/arginine-rich splicing factor SR30 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 11
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03013 Nucleocytoplasmic transport 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 11
bna03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 9
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00514 Other types of O-glycan biosynthesis 2
ghi03083 Polycomb repressive complex 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00514 Other types of O-glycan biosynthesis 2
ghi03083 Polycomb repressive complex 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 9
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 7
vvi03010 Ribosome 4
vvi00510 N-Glycan biosynthesis 3
vvi00513 Various types of N-glycan biosynthesis 3
vvi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 7
mtr04120 Ubiquitin mediated proteolysis 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 10
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04626 Plant-pathogen interaction 3
osa03040 Spliceosome 3
osa04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 6
zma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 9
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 8
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824105 837433 103873059 103868210 106347782 106399770 107919887 107893284 102615989 102626504 100786491 100789847 100255499 100853709 7462688 18096446 11412312 11430016 101247256 101257012 102584103 102592958 107799110 107784603 4332806 4338552 100285019 100217203 123078916 123129630 123448632 123444166 8079637 110430546 100834993 100840113 5715295
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