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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SR34   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-r.7   SR34   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.9   SR34   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-e.2   SR34   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.bio   SR34   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.hor   SR34   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.lig   SR34   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.str   SR34   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.tis   SR34   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   SR34a   SER/ARG-rich protein 34A 
 ath-u.5   SR34b   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   SR30   SERINE-ARGININE PROTEIN 30 
 gma-u.5   100786491   pre-mRNA-splicing factor SF2-like 
 gma-u.5   100789847   serine/arginine-rich-splicing factor SR34 
 gma-u.5   100794282   serine/arginine-rich splicing factor SR30 
 vvi-u.5   100249315   serine/arginine-rich splicing factor SR30 
 vvi-u.5   100853709   serine/arginine-rich splicing factor SR34A 
 vvi-u.5   100255499   serine/arginine-rich-splicing factor SR34 
 ppo-u.5   7462688   serine/arginine-rich-splicing factor SR34 
 ppo-u.5   7481727   serine/arginine-rich splicing factor SR30 
 ppo-u.5   18096446   serine/arginine-rich-splicing factor SR34 
 mtr-u.5   11412312   serine/arginine-rich splicing factor SR30 
 mtr-u.5   11430819   serine/arginine-rich splicing factor SR34A 
 mtr-u.5   11430016   serine/arginine-rich-splicing factor SR34 
 sly-u.5   101247702   serine/arginine-rich splicing factor SR34A 
 sly-u.5   101247256   serine/arginine-rich-splicing factor SR34 
 sly-u.5   101257012   serine/arginine-rich splicing factor SR30 
 osa-u.5   4344256   serine/arginine-rich-splicing factor SR34 
 osa-u.5   4338552   serine/arginine-rich-splicing factor SR34 
 osa-u.5   4332806   serine/arginine-rich-splicing factor SR34 
 zma-u.5   100285019   uncharacterized LOC100285019 
 zma-u.5   100217203   uncharacterized LOC100217203 
 zma-u.5   100284054   pre-mRNA-splicing factor SF2 

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Top 50 coexpressed genes to SR34 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SR34 (ath-u.5 coexpression data)

CoexMap"839262"


athSR34 | Entrez gene ID : 839262      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 12 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO CC
GO:0035061 [list] [network] interchromatin granule  (2 genes)  IDA  
GO:0016607 [list] [network] nuclear speck  (52 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISS  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001318908.1 [sequence] [blastp]
NP_001321307.1 [sequence] [blastp]
NP_001321308.1 [sequence] [blastp]
NP_850933.1 [sequence] [blastp]
NP_850934.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for NP_001318908.1)
nucl 6,  cyto 4  (predict for NP_001321307.1)
nucl 6,  cyto 4  (predict for NP_001321308.1)
nucl 7,  cyto 1,  mito 1,  plas 1,  cyto_pero 1,  mito_plas 1,  cyto_E.R. 1  (predict for NP_850933.1)
nucl 6,  cyto 2,  mito 1,  plas 1,  mito_plas 1  (predict for NP_850934.1)
Subcellular
localization
TargetP
other 7,  mito 5  (predict for NP_001318908.1)
other 7,  mito 5  (predict for NP_001321307.1)
other 7,  mito 5  (predict for NP_001321308.1)
other 7,  mito 5  (predict for NP_850933.1)
other 7,  mito 5  (predict for NP_850934.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SR34

.
ath-r.7
for
SR34

.
ath-m.9
for
SR34

.
ath-e.2
for
SR34

.
ath-m.4.bio
for
SR34

.
ath-m.4.hor
for
SR34

.
ath-m.4.lig
for
SR34

.
ath-m.4.str
for
SR34

.
ath-m.4.tis
for
SR34

.
ath-u.5
for
SR34a

.
ath-u.5
for
SR34b

.
ath-u.5
for
SR30

.
gma-u.5
for
100786491

.
gma-u.5
for
100789847

.
gma-u.5
for
100794282

.
vvi-u.5
for
100249315

.
vvi-u.5
for
100853709

.
vvi-u.5
for
100255499

.
ppo-u.5
for
7462688

.
ppo-u.5
for
7481727

.
ppo-u.5
for
18096446

.
mtr-u.5
for
11412312

.
mtr-u.5
for
11430819

.
mtr-u.5
for
11430016

.
sly-u.5
for
101247702

.
sly-u.5
for
101247256

.
sly-u.5
for
101257012

.
osa-u.5
for
4344256

.
osa-u.5
for
4338552

.
osa-u.5
for
4332806

.
zma-u.5
for
100285019

.
zma-u.5
for
100217203

.
zma-u.5
for
100284054

.


Ortholog ID: 845
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol SR34a SR30 LOC100786491 LOC100789847 LOC101247256 LOC101257012 LOC4332806 LOC4338552 LOC100285019 LOC100217203 LOC103873059 LOC103868210 LOC100255499 LOC100853709 LOC7462688 LOC18096446 LOC11412312 LOC11430016 LOC123078916 LOC123129630 LOC123448632 LOC123444166 LOC107919887 LOC107893284 LOC106347782 LOC106399770 CHLRE_01g026450v5 LOC8079637 LOC110430546 LOC102584103 LOC102592958 LOC102615989 LOC102626504 LOC100834993 LOC100840113 LOC107799110 LOC107784603
Function* SER/ARG-rich protein 34A SERINE-ARGININE PROTEIN 30 pre-mRNA-splicing factor SF2-like serine/arginine-rich-splicing factor SR34 serine/arginine-rich-splicing factor SR34 serine/arginine-rich splicing factor SR30 serine/arginine-rich-splicing factor SR34 serine/arginine-rich-splicing factor SR34 uncharacterized LOC100285019 uncharacterized LOC100217203 serine/arginine-rich splicing factor SR34A serine/arginine-rich-splicing factor SR34 serine/arginine-rich-splicing factor SR34 serine/arginine-rich splicing factor SR34A serine/arginine-rich-splicing factor SR34 serine/arginine-rich-splicing factor SR34 serine/arginine-rich splicing factor SR30 serine/arginine-rich-splicing factor SR34 serine/arginine-rich-splicing factor SR34 serine/arginine-rich-splicing factor SR34 serine/arginine-rich splicing factor SR34A-like serine/arginine-rich-splicing factor SR34-like serine/arginine-rich splicing factor SR30 serine/arginine-rich splicing factor SR30 serine/arginine-rich splicing factor SR34A serine/arginine-rich-splicing factor SR34 uncharacterized protein serine/arginine-rich splicing factor SR30 serine/arginine-rich-splicing factor SR34-like serine/arginine-rich-splicing factor SR34-like serine/arginine-rich-splicing factor SR34-like serine/arginine-rich splicing factor SR30-like serine/arginine-rich-splicing factor SR34 serine/arginine-rich-splicing factor SR34 serine/arginine-rich splicing factor SR30 serine/arginine-rich splicing factor SR34A serine/arginine-rich splicing factor SR30
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 11
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 9
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 10
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04626 Plant-pathogen interaction 3
osa03040 Spliceosome 3
osa04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 6
zma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 9
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03013 Nucleocytoplasmic transport 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 7
vvi03010 Ribosome 4
vvi00510 N-Glycan biosynthesis 3
vvi00513 Various types of N-glycan biosynthesis 3
vvi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 7
mtr04120 Ubiquitin mediated proteolysis 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00514 Other types of O-glycan biosynthesis 2
ghi03083 Polycomb repressive complex 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00514 Other types of O-glycan biosynthesis 2
ghi03083 Polycomb repressive complex 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 11
bna03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 9
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 8
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 2
nta03450 Non-homologous end-joining 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824105 837433 100786491 100789847 101247256 101257012 4332806 4338552 100285019 100217203 103873059 103868210 100255499 100853709 7462688 18096446 11412312 11430016 123078916 123129630 123448632 123444166 107919887 107893284 106347782 106399770 5715295 8079637 110430546 102584103 102592958 102615989 102626504 100834993 100840113 107799110 107784603
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