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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11430397   pentatricopeptide repeat-containing protein At1g12300, mitochondrial 
 mtr-r.5   11430397   pentatricopeptide repeat-containing protein At1g12300, mitochondrial 
 mtr-m.5   11430397   pentatricopeptide repeat-containing protein At1g12300, mitochondrial 
 mtr-u.5   120576112   pentatricopeptide repeat-containing protein At1g12300, mitochondrial 
 mtr-u.5   11411617   pentatricopeptide repeat-containing protein At1g62930, chloroplastic 
 mtr-u.5   112417994   pentatricopeptide repeat-containing protein At1g12300, mitochondrial 
 gma-u.5   100786599   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 gma-u.5   100789435   pentatricopeptide repeat-containing protein At1g62930, chloroplastic 
 ppo-u.5   7494521   pentatricopeptide repeat-containing protein At1g62930, chloroplastic 
 ppo-u.5   7465949   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 ath-u.5   RPF3   Tetratricopeptide repeat (TPR)-like superfamily protein 
 vvi-u.5   100252034   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 vvi-u.5   100258882   pentatricopeptide repeat-containing protein At1g62914, mitochondrial 
 vvi-u.5   100253509   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 sly-u.5   104647283   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 sly-u.5   101244875   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 sly-u.5   101266330   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 

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Top 50 coexpressed genes to 11430397 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11430397 (mtr-u.5 coexpression data)

CoexMap"11430397"


mtrLOC11430397 | Entrez gene ID : 11430397    
Species mtr gma ppo ath vvi sly sbi nta bra osa cre cit hvu bdi sot zma tae bna ghi
Paralog 6 2 2 1 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (294 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5045 genes)  IEA  
Protein XP_024632646.1 [sequence] [blastp]
XP_039690612.1 [sequence] [blastp]
XP_039690614.1 [sequence] [blastp]
XP_039690619.1 [sequence] [blastp]
XP_039690623.1 [sequence] [blastp]
XP_039690628.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 1,  extr 1,  nucl 1,  E.R. 1,  pero 1,  cyto_mito 1,  mito_plas 1  (predict for XP_024632646.1)
chlo 5,  mito 1,  extr 1,  nucl 1,  E.R. 1,  pero 1,  cyto_mito 1,  mito_plas 1  (predict for XP_039690612.1)
chlo 5,  mito 1,  extr 1,  nucl 1,  E.R. 1,  pero 1,  cyto_mito 1,  mito_plas 1  (predict for XP_039690614.1)
chlo 5,  mito 1,  extr 1,  nucl 1,  E.R. 1,  pero 1,  cyto_mito 1,  mito_plas 1  (predict for XP_039690619.1)
chlo 5,  mito 1,  extr 1,  nucl 1,  E.R. 1,  pero 1,  cyto_mito 1,  mito_plas 1  (predict for XP_039690623.1)
chlo 5,  mito 1,  extr 1,  nucl 1,  E.R. 1,  pero 1,  cyto_mito 1,  mito_plas 1  (predict for XP_039690628.1)
Subcellular
localization
TargetP
scret 2  (predict for XP_024632646.1)
scret 2  (predict for XP_039690612.1)
scret 2  (predict for XP_039690614.1)
scret 2  (predict for XP_039690619.1)
scret 2  (predict for XP_039690623.1)
scret 2  (predict for XP_039690628.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11430397

.
mtr-r.5
for
11430397

.
mtr-m.5
for
11430397

.
mtr-u.5
for
120576112

.
mtr-u.5
for
11411617

.
mtr-u.5
for
112417994

.
gma-u.5
for
100786599

.
gma-u.5
for
100789435

.
ppo-u.5
for
7494521

.
ppo-u.5
for
7465949

.
ath-u.5
for
RPF3

.
vvi-u.5
for
100252034

.
vvi-u.5
for
100258882

.
vvi-u.5
for
100253509

.
sly-u.5
for
104647283

.
sly-u.5
for
101244875

.
sly-u.5
for
101266330

.


Ortholog ID: 117
Species ath ath gma gma sly bra bra vvi vvi ppo mtr ghi ghi bna sot sot nta nta
Symbol AT1G64580 AT1G62914 LOC102663951 LOC121173775 LOC104647283 LOC103843088 LOC103843103 LOC100258882 LOC100253509 LOC18106937 LOC11419137 LOC121203206 LOC107903763 LOC106397711 LOC102597388 LOC102604609 LOC107821834 LOC107770637
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide (PPR) repeat-containing protein putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial uncharacterized LOC121173775 putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial pentatricopeptide repeat-containing protein At1g12620 pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like pentatricopeptide repeat-containing protein At1g62914, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial pentatricopeptide repeat-containing protein At1g62930, chloroplastic putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial pentatricopeptide repeat-containing protein At3g22470, mitochondrial pentatricopeptide repeat-containing protein At1g63330 pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial uncharacterized LOC107821834 uncharacterized LOC107770637
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00220 Arginine biosynthesis 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi03250 Viral life cycle - HIV-1 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00460 Cyanoamino acid metabolism 2
sot00500 Starch and sucrose metabolism 2
sot00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 5
nta03030 DNA replication 3
nta03420 Nucleotide excision repair 3
nta03440 Homologous recombination 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842766 10723105 102663951 121173775 104647283 103843088 103843103 100258882 100253509 18106937 11419137 121203206 107903763 106397711 102597388 102604609 107821834 107770637
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