ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	11432476	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
mtr-r.5	11432476	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
mtr-m.5	11432476	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
mtr-u.5	11441515	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
mtr-u.5	11438335	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
mtr-u.5	11405342	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
gma-u.5	100814637	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
gma-u.5	DXS1	1-deoxy-D-xylulose 5-phosphate synthase 1
gma-u.5	100776569	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
ppo-u.5	112327902	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
ppo-u.5	18101075	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
ppo-u.5	18102278	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
ath-u.5	DXPS1	1-deoxy-D-xylulose 5-phosphate synthase 1
ath-u.5	CLA1	Deoxyxylulose-5-phosphate synthase
ath-u.5	DXPS3	1-deoxy-D-xylulose 5-phosphate synthase 3
vvi-u.5	100268079	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
vvi-u.5	100249323	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
sly-u.5	dxs2	1-deoxy-D-xylulose 5-phosphate synthase 2
sly-u.5	101260957	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
sly-u.5	DXS	1-D-deoxyxylulose 5-phosphate synthase
osa-u.5	4340090	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
osa-u.5	4342614	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
osa-u.5	4338768	1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic-like
zma-u.5	606430	deoxy xylulose synthase 2
zma-u.5	606484	deoxy xylulose synthase 1
zma-u.5	100384006	uncharacterized LOC100384006

Top 50 coexpressed genes to 11432476 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 11432476 (mtr-u.5 coexpression data)

CoexMap"11432476"

[Cytoscape]

Annotation

functional annotation

KEGG

mtr00730 [list] [network] Thiamine metabolism (23 genes)

mtr00900 [list] [network] Terpenoid backbone biosynthesis (60 genes)

GO BP

GO:0016114 [list] [network] terpenoid biosynthetic process

(118 genes)

IEA

GO CC

GO MF

GO:0008661 [list] [network] 1-deoxy-D-xylulose-5-phosphate synthase activity

(5 genes)

IEA

Protein

NP_001408948.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 10

(predict for NP_001408948.1)

Subcellular
localization
TargetP

mito 6

(predict for NP_001408948.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11432476	mtr-r.5 for 11432476	mtr-m.5 for 11432476	mtr-u.5 for 11441515	mtr-u.5 for 11438335	mtr-u.5 for 11405342	gma-u.5 for 100814637	gma-u.5 for DXS1	gma-u.5 for 100776569	ppo-u.5 for 112327902	ppo-u.5 for 18101075	ppo-u.5 for 18102278	ath-u.5 for DXPS1	ath-u.5 for CLA1	ath-u.5 for DXPS3	vvi-u.5 for 100268079	vvi-u.5 for 100249323	sly-u.5 for dxs2	sly-u.5 for 101260957	sly-u.5 for DXS	osa-u.5 for 4340090	osa-u.5 for 4342614	osa-u.5 for 4338768	zma-u.5 for 606430	zma-u.5 for 606484	zma-u.5 for 100384006

Ortholog

Ortholog ID: 1108

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

DXPS3

CLA1

DXS

Function^*

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic