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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121206158   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 ghi-r.1   107889310   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 ghi-r.1   107891426   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 ath-u.5   AT5G13770   Pentatricopeptide repeat (PPR-like) superfamily protein 
 bra-r.6   103850898   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 bna-r.1   106384430   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 cit-r.1   102631325   pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like 
 cit-r.1   102614221   pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like 
 gma-u.5   100819668   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 gma-u.5   100783386   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 vvi-u.5   100261964   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 vvi-u.5   100256233   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 ppo-u.5   18109218   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 ppo-u.5   7459078   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 mtr-u.5   25482643   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 sly-u.5   101254893   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 sot-r.1   107062002   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 nta-r.1   107786939   uncharacterized LOC107786939 
 osa-u.5   9271390   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 zma-u.5   100274460   uncharacterized LOC100274460 
 tae-r.2   123189982   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 tae-r.2   123054094   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 tae-r.2   123046221   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 hvu-r.1   123430614   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 sbi-r.1   110436337   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 
 bdi-r.1   100840486   pentatricopeptide repeat-containing protein At5g13770, chloroplastic 

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Top 50 coexpressed genes to 121206158 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121206158 (ghi-r.1 coexpression data)

CoexMap"121206158"


ghiLOC121206158 | Entrez gene ID : 121206158    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 1 1 2 2 2 2 1 1 1 1 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_040932464.1 [sequence] [blastp]
XP_040932465.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  cyto 3,  E.R. 3,  cyto_nucl 3,  cyto_E.R. 3  (predict for XP_040932464.1)
E.R. 3,  E.R._plas 2,  cyto 2,  nucl 1,  plas 1,  cyto_pero 1  (predict for XP_040932465.1)
Subcellular
localization
TargetP
other 7  (predict for XP_040932464.1)
other 6,  scret 5  (predict for XP_040932465.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121206158
ghi-r.1
for
107889310
ghi-r.1
for
107891426
ath-u.5
for
AT5G13770
bra-r.6
for
103850898
bna-r.1
for
106384430
cit-r.1
for
102631325
cit-r.1
for
102614221
gma-u.5
for
100819668
gma-u.5
for
100783386
vvi-u.5
for
100261964
vvi-u.5
for
100256233
ppo-u.5
for
18109218
ppo-u.5
for
7459078
mtr-u.5
for
25482643
sly-u.5
for
101254893
sot-r.1
for
107062002
nta-r.1
for
107786939
osa-u.5
for
9271390
zma-u.5
for
100274460
tae-r.2
for
123189982
tae-r.2
for
123054094
tae-r.2
for
123046221
hvu-r.1
for
123430614
sbi-r.1
for
110436337
bdi-r.1
for
100840486


Ortholog ID: 9657
Species ghi ghi ghi ath bra bna cit cit gma gma vvi vvi ppo ppo mtr sly sot nta osa zma tae tae tae hvu sbi bdi
Symbol LOC121206158 LOC107889310 LOC107891426 AT5G13770 LOC103850898 LOC106384430 LOC102631325 LOC102614221 LOC100819668 LOC100783386 LOC100261964 LOC100256233 LOC18109218 LOC7459078 LOC25482643 LOC101254893 LOC107062002 LOC107786939 LOC9271390 LOC100274460 LOC123189982 LOC123054094 LOC123046221 LOC123430614 LOC110436337 LOC100840486
Function* pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic Pentatricopeptide repeat (PPR-like) superfamily protein pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic uncharacterized LOC107786939 pentatricopeptide repeat-containing protein At5g13770, chloroplastic uncharacterized LOC100274460 pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic pentatricopeptide repeat-containing protein At5g13770, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 3
ath00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 3
bna04517 IgSF CAM signaling 2
bna04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 9
cit00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 4
gma00760 Nicotinate and nicotinamide metabolism 2
gma00195 Photosynthesis 2
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 6
ppo00195 Photosynthesis 5
ppo00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 10
mtr00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00860 Porphyrin metabolism 4
sly00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00860 Porphyrin metabolism 4
sot00196 Photosynthesis - antenna proteins 3
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121206158 107889310 107891426 831222 103850898 106384430 102631325 102614221 100819668 100783386 100261964 100256233 18109218 7459078 25482643 101254893 107062002 107786939 9271390 100274460 123189982 123054094 123046221 123430614 110436337 100840486
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